miRNA display CGI


Results 61 - 80 of 423 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 3' -68.4 NC_001798.1 + 134147 0.68 0.307156
Target:  5'- cCGaCGUCUCGGCccccgGGGCCGucgcggccgcccGCGCCGCg -3'
miRNA:   3'- aGC-GCGGGGCCG-----CCCGGCc-----------UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 133751 0.67 0.356239
Target:  5'- gCGCGCgCCCGcGUGG---GGGCGCUGCu -3'
miRNA:   3'- aGCGCG-GGGC-CGCCcggCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 133045 0.66 0.424951
Target:  5'- gUCGCGCUCauGCGcGGCCucaacagccuGGuCGgCCGCa -3'
miRNA:   3'- -AGCGCGGGgcCGC-CCGG----------CCuGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 132140 0.79 0.056311
Target:  5'- cUGCGCCgccgggggCCGGCGGGCgGGGCGCCc- -3'
miRNA:   3'- aGCGCGG--------GGCCGCCCGgCCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 131556 0.66 0.378258
Target:  5'- -aGCGCCCCGaCGGcCCGGuGCGuaacugugguCCGCg -3'
miRNA:   3'- agCGCGGGGCcGCCcGGCC-UGC----------GGCG- -5'
5211 3' -68.4 NC_001798.1 + 131339 0.74 0.122293
Target:  5'- cCGCGCCCCGGgcgcgacguCGGcGCCcGGCGCgGCc -3'
miRNA:   3'- aGCGCGGGGCC---------GCC-CGGcCUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 131068 0.7 0.217954
Target:  5'- cCGCGCCCaccgCGGCGuaCaCGGcCGCCGCc -3'
miRNA:   3'- aGCGCGGG----GCCGCccG-GCCuGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 129727 0.67 0.349103
Target:  5'- aUCGCGUCacaccaaCGGCGGGaCCccGACGUgGCc -3'
miRNA:   3'- -AGCGCGGg------GCCGCCC-GGc-CUGCGgCG- -5'
5211 3' -68.4 NC_001798.1 + 129657 0.69 0.277407
Target:  5'- aCGUGCCCCccgacgugcGCGuGGucacCCGGGCGCCGg -3'
miRNA:   3'- aGCGCGGGGc--------CGC-CC----GGCCUGCGGCg -5'
5211 3' -68.4 NC_001798.1 + 129350 0.72 0.16974
Target:  5'- -aGCGCCCgccgggccUGGCGGGgcccCCGGAC-CCGCc -3'
miRNA:   3'- agCGCGGG--------GCCGCCC----GGCCUGcGGCG- -5'
5211 3' -68.4 NC_001798.1 + 129150 0.66 0.378258
Target:  5'- ---aGCUCCGG-GGaGCUGGuuCGCCGCg -3'
miRNA:   3'- agcgCGGGGCCgCC-CGGCCu-GCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 128946 0.71 0.189918
Target:  5'- uUCGCGCCCgGGCgcguuccGGGCCcGGAgGaggCGCu -3'
miRNA:   3'- -AGCGCGGGgCCG-------CCCGG-CCUgCg--GCG- -5'
5211 3' -68.4 NC_001798.1 + 128400 0.7 0.243509
Target:  5'- cUGgGCCCugcuuCGGCgGGGCCuGACGaCCGCc -3'
miRNA:   3'- aGCgCGGG-----GCCG-CCCGGcCUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 125714 0.71 0.208392
Target:  5'- gCGCGCgCgggGGCGGcgagaugaGCCGaGACGCCGCc -3'
miRNA:   3'- aGCGCGgGg--CCGCC--------CGGC-CUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 125463 0.67 0.335138
Target:  5'- cCGaCGCCCgggaccacggucUGGUGGcGCuUGGGCGUCGCg -3'
miRNA:   3'- aGC-GCGGG------------GCCGCC-CG-GCCUGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 124895 0.66 0.385798
Target:  5'- -gGCGCgCUGGCGGaaguGCCGcACGgCCGUg -3'
miRNA:   3'- agCGCGgGGCCGCC----CGGCcUGC-GGCG- -5'
5211 3' -68.4 NC_001798.1 + 124424 0.67 0.341371
Target:  5'- -aGCuGCCCCGcggucgcGCGGGCC-GugGCCa- -3'
miRNA:   3'- agCG-CGGGGC-------CGCCCGGcCugCGGcg -5'
5211 3' -68.4 NC_001798.1 + 124135 0.67 0.349103
Target:  5'- gCGCGCCCCcgccguGGCGgaGGCCuGucccuGCGUCGCc -3'
miRNA:   3'- aGCGCGGGG------CCGC--CCGGcC-----UGCGGCG- -5'
5211 3' -68.4 NC_001798.1 + 123415 0.7 0.243509
Target:  5'- cCGCgGCCCCGcCGGGUCaccgGGGCGCCc- -3'
miRNA:   3'- aGCG-CGGGGCcGCCCGG----CCUGCGGcg -5'
5211 3' -68.4 NC_001798.1 + 122594 0.7 0.238206
Target:  5'- aUCGCGUgUCuGCGGGCCcuGGGCcacucuauccggGCCGCg -3'
miRNA:   3'- -AGCGCGgGGcCGCCCGG--CCUG------------CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.