miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5211 5' -52.8 NC_001798.1 + 122333 0.67 0.981911
Target:  5'- uUCGUcGUCGUCuccuaCGAgAauUCGGuGGCGUGGg -3'
miRNA:   3'- -AGCA-CAGCAG-----GCUgU--AGCU-CUGCACC- -5'
5211 5' -52.8 NC_001798.1 + 125450 0.67 0.981911
Target:  5'- gUCGUGgagCGUcCCGACGccCGGGACcacggucugGUGGc -3'
miRNA:   3'- -AGCACa--GCA-GGCUGUa-GCUCUG---------CACC- -5'
5211 5' -52.8 NC_001798.1 + 138281 0.67 0.975097
Target:  5'- cCGUGUCGU-UGAUGUCGcccACGUGGc -3'
miRNA:   3'- aGCACAGCAgGCUGUAGCuc-UGCACC- -5'
5211 5' -52.8 NC_001798.1 + 4248 0.67 0.969618
Target:  5'- gUCGUcGUCGUCaGACGagGAGGCGg-- -3'
miRNA:   3'- -AGCA-CAGCAGgCUGUagCUCUGCacc -5'
5211 5' -52.8 NC_001798.1 + 42622 0.68 0.963328
Target:  5'- ---cGUCGUCCGGgAggGGGcCGUGGg -3'
miRNA:   3'- agcaCAGCAGGCUgUagCUCuGCACC- -5'
5211 5' -52.8 NC_001798.1 + 77716 0.68 0.963328
Target:  5'- gCGcUGggcCG-CCGGCGUCGAGGCGgcgcUGGa -3'
miRNA:   3'- aGC-ACa--GCaGGCUGUAGCUCUGC----ACC- -5'
5211 5' -52.8 NC_001798.1 + 10376 0.68 0.959865
Target:  5'- gUCGUaGUCGUCgGGgGUCGGGGuCGgcacagGGg -3'
miRNA:   3'- -AGCA-CAGCAGgCUgUAGCUCU-GCa-----CC- -5'
5211 5' -52.8 NC_001798.1 + 52345 0.68 0.956182
Target:  5'- gUCGUGgCGgCCGAgCA-CGAGGCGcUGGg -3'
miRNA:   3'- -AGCACaGCaGGCU-GUaGCUCUGC-ACC- -5'
5211 5' -52.8 NC_001798.1 + 66950 0.7 0.91267
Target:  5'- aCGgaGUCGUCCGACcgCGAGuCGg-- -3'
miRNA:   3'- aGCa-CAGCAGGCUGuaGCUCuGCacc -5'
5211 5' -52.8 NC_001798.1 + 109762 0.71 0.858267
Target:  5'- cUGUGUaCGUCCGACGUCGcgcGGCGa-- -3'
miRNA:   3'- aGCACA-GCAGGCUGUAGCu--CUGCacc -5'
5211 5' -52.8 NC_001798.1 + 75165 0.72 0.817554
Target:  5'- gUCGUcGcCGUCCGuGC-UCGAGACGcUGGg -3'
miRNA:   3'- -AGCA-CaGCAGGC-UGuAGCUCUGC-ACC- -5'
5211 5' -52.8 NC_001798.1 + 80822 1 0.029467
Target:  5'- gUCGUGUCGUCCGACAU-GAGACGUGGg -3'
miRNA:   3'- -AGCACAGCAGGCUGUAgCUCUGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.