miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 3' -61.1 NC_001798.1 + 56809 0.66 0.696912
Target:  5'- aGGUCaCgGUGGaGaCGGUGGAaaagccgucGGGGUUCUc -3'
miRNA:   3'- -CCGG-GgCACC-C-GCCACCU---------CCUCAAGG- -5'
5214 3' -61.1 NC_001798.1 + 35791 0.66 0.696912
Target:  5'- gGGUCUccuuCGUcGGGCGGcgGGGGGGGggCg -3'
miRNA:   3'- -CCGGG----GCA-CCCGCCa-CCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 79244 0.66 0.696912
Target:  5'- cGCCCUGggGGGCcugcUGGcGGAGUUCg -3'
miRNA:   3'- cCGGGGCa-CCCGcc--ACCuCCUCAAGg -5'
5214 3' -61.1 NC_001798.1 + 5905 0.66 0.696912
Target:  5'- cGCCCCGa-GGCGGgcccggacGGGGGGcgggccGUUCCu -3'
miRNA:   3'- cCGGGGCacCCGCCa-------CCUCCU------CAAGG- -5'
5214 3' -61.1 NC_001798.1 + 25335 0.67 0.687288
Target:  5'- cGCCCCGcGGGCcGUGGccGAGcUCa -3'
miRNA:   3'- cCGGGGCaCCCGcCACCucCUCaAGg -5'
5214 3' -61.1 NC_001798.1 + 15555 0.67 0.686323
Target:  5'- cGGCCCCG-GGcguugccgccgccGCGGcGG-GGAGUggcgacgacUCCa -3'
miRNA:   3'- -CCGGGGCaCC-------------CGCCaCCuCCUCA---------AGG- -5'
5214 3' -61.1 NC_001798.1 + 81027 0.67 0.681493
Target:  5'- cGGCCCCccugacgugcgguuuGUGGGCagcgaGGccaccGAGGAGcUUCCg -3'
miRNA:   3'- -CCGGGG---------------CACCCG-----CCac---CUCCUC-AAGG- -5'
5214 3' -61.1 NC_001798.1 + 30503 0.67 0.677623
Target:  5'- uGGgCCCGUGGGUGa-GGAGGAa---- -3'
miRNA:   3'- -CCgGGGCACCCGCcaCCUCCUcaagg -5'
5214 3' -61.1 NC_001798.1 + 53961 0.67 0.677623
Target:  5'- uGGCCCUGcGGGCGGcGGucAGcGAcgUCCu -3'
miRNA:   3'- -CCGGGGCaCCCGCCaCC--UC-CUcaAGG- -5'
5214 3' -61.1 NC_001798.1 + 23572 0.67 0.677623
Target:  5'- gGGCCCCGgGGGCGGcgccccGGccGAGc-CCg -3'
miRNA:   3'- -CCGGGGCaCCCGCCa-----CCucCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 11655 0.67 0.673747
Target:  5'- -uCCCCGgGGGCGGgggucgggucucgGGGGGAGgaCg -3'
miRNA:   3'- ccGGGGCaCCCGCCa------------CCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 78044 0.67 0.671807
Target:  5'- aGCCCC-UGGcGCGGcugcugcgcaucgcGGAGGGGcUCCu -3'
miRNA:   3'- cCGGGGcACC-CGCCa-------------CCUCCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 85805 0.67 0.667923
Target:  5'- uGGCCuCCGgGGGCGaugacGGGGGGGggCg -3'
miRNA:   3'- -CCGG-GGCaCCCGCca---CCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 73926 0.67 0.667923
Target:  5'- aGGCCaUCGaGGGaugucuGGUGGAGGGGggCg -3'
miRNA:   3'- -CCGG-GGCaCCCg-----CCACCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 15439 0.67 0.667923
Target:  5'- gGGCCCCGgagucgugGGGCGG-GGGGucgcguGGGUa-- -3'
miRNA:   3'- -CCGGGGCa-------CCCGCCaCCUC------CUCAagg -5'
5214 3' -61.1 NC_001798.1 + 72858 0.67 0.658198
Target:  5'- gGGCCCCGa--GCgGGUGGccGAGUUCg -3'
miRNA:   3'- -CCGGGGCaccCG-CCACCucCUCAAGg -5'
5214 3' -61.1 NC_001798.1 + 26518 0.67 0.658198
Target:  5'- uGGCCgCGgcGGGCGGcggcgUGGAGGuGGUggggaCCg -3'
miRNA:   3'- -CCGGgGCa-CCCGCC-----ACCUCC-UCAa----GG- -5'
5214 3' -61.1 NC_001798.1 + 69168 0.67 0.648453
Target:  5'- gGGCggagCCCGauggcGGGCcaGGUGGGGGAGgUCg -3'
miRNA:   3'- -CCG----GGGCa----CCCG--CCACCUCCUCaAGg -5'
5214 3' -61.1 NC_001798.1 + 29487 0.67 0.644551
Target:  5'- uGGuCCCCG-GGGaCGGggccgccccgagaGGGGGGGaUUCCc -3'
miRNA:   3'- -CC-GGGGCaCCC-GCCa------------CCUCCUC-AAGG- -5'
5214 3' -61.1 NC_001798.1 + 78962 0.67 0.638697
Target:  5'- uGGCCgCGUccGGGgGGgcgccUGGAagucccccgaGGGGUUCCg -3'
miRNA:   3'- -CCGGgGCA--CCCgCC-----ACCU----------CCUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.