Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5214 | 5' | -51.4 | NC_001798.1 | + | 10704 | 0.67 | 0.983413 |
Target: 5'- aGGGGACcgcaggCAUCCAGggguuCCGCggcccacaguaguuuGUGGGc -3' miRNA: 3'- gCCCUUGa-----GUAGGUUau---GGCG---------------UACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 68432 | 0.66 | 0.991822 |
Target: 5'- uGGGggUUCGUgacuuggcucgCCGAgcACCGCG-GGGa -3' miRNA: 3'- gCCCuuGAGUA-----------GGUUa-UGGCGUaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 3965 | 0.66 | 0.99288 |
Target: 5'- cCGGaGGccGCgucggCGUCCAGcucgACCGCcgGGGc -3' miRNA: 3'- -GCC-CU--UGa----GUAGGUUa---UGGCGuaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 29561 | 0.66 | 0.99288 |
Target: 5'- gGGGGAaUCGUa-AAUGCCGCcccuuUGGGg -3' miRNA: 3'- gCCCUUgAGUAggUUAUGGCGu----ACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 97737 | 0.66 | 0.99288 |
Target: 5'- gGGGAGCUCGagaaGAUGCUGC--GGGu -3' miRNA: 3'- gCCCUUGAGUagg-UUAUGGCGuaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 91126 | 0.66 | 0.99288 |
Target: 5'- gCGGGGGCguccUCGUCCAGcgaaCGCG-GGGc -3' miRNA: 3'- -GCCCUUG----AGUAGGUUaug-GCGUaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 141175 | 0.66 | 0.99298 |
Target: 5'- gGGGAGCgugCGUUCAAUuuuaagcaccugggcCCGCGggacgGGGg -3' miRNA: 3'- gCCCUUGa--GUAGGUUAu--------------GGCGUa----CCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 59509 | 0.66 | 0.993826 |
Target: 5'- aGGGcAAC----CCAAaGCCGUAUGGGg -3' miRNA: 3'- gCCC-UUGaguaGGUUaUGGCGUACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 95203 | 0.66 | 0.993826 |
Target: 5'- cCGGGAACUgGgCCA--GCCuGC-UGGGc -3' miRNA: 3'- -GCCCUUGAgUaGGUuaUGG-CGuACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 150621 | 0.66 | 0.991822 |
Target: 5'- gGGGGGC---UCCuggGCCGCGcGGGg -3' miRNA: 3'- gCCCUUGaguAGGuuaUGGCGUaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 46671 | 0.66 | 0.991822 |
Target: 5'- aCGuGGGGCcCGgggCCgGAUACCGCggGGGc -3' miRNA: 3'- -GC-CCUUGaGUa--GG-UUAUGGCGuaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 125319 | 0.67 | 0.984542 |
Target: 5'- uCGGGGGC-CAggaacUCCAGcuugGCCGUGUGGu -3' miRNA: 3'- -GCCCUUGaGU-----AGGUUa---UGGCGUACCc -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 35521 | 0.67 | 0.986293 |
Target: 5'- aGGGGuucuCUCcgCCGcgGCCgGCGcGGGg -3' miRNA: 3'- gCCCUu---GAGuaGGUuaUGG-CGUaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 69195 | 0.67 | 0.986293 |
Target: 5'- gGGGAGgUCGguggGGUGCCGCA-GGGc -3' miRNA: 3'- gCCCUUgAGUagg-UUAUGGCGUaCCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 103452 | 0.67 | 0.987887 |
Target: 5'- aGGGggUUC-UCCGGaggcaggGCCGCAcgcaccgugucUGGGu -3' miRNA: 3'- gCCCuuGAGuAGGUUa------UGGCGU-----------ACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 133264 | 0.67 | 0.987887 |
Target: 5'- uGGGAGCUguUCCGucuGUgcagcaccaugGCCGCgugccugcaGUGGGa -3' miRNA: 3'- gCCCUUGAguAGGU---UA-----------UGGCG---------UACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 88023 | 0.66 | 0.989334 |
Target: 5'- cCGGGGgcGCUUggCCGGggagggcaggGCCGC-UGGGg -3' miRNA: 3'- -GCCCU--UGAGuaGGUUa---------UGGCGuACCC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 128648 | 0.66 | 0.990643 |
Target: 5'- cCGGGGAcCUCG-CCGaggagaacGUGCaCGCGUGcGGg -3' miRNA: 3'- -GCCCUU-GAGUaGGU--------UAUG-GCGUAC-CC- -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 142951 | 0.66 | 0.99113 |
Target: 5'- gGGGAcggccgggcagagccGCcCAUCCGAggACCGCGUGu- -3' miRNA: 3'- gCCCU---------------UGaGUAGGUUa-UGGCGUACcc -5' |
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5214 | 5' | -51.4 | NC_001798.1 | + | 79325 | 1.11 | 0.007141 |
Target: 5'- gCGGGAACUCAUCCAAUACCGCAUGGGc -3' miRNA: 3'- -GCCCUUGAGUAGGUUAUGGCGUACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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