miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 5' -51.4 NC_001798.1 + 79325 1.11 0.007141
Target:  5'- gCGGGAACUCAUCCAAUACCGCAUGGGc -3'
miRNA:   3'- -GCCCUUGAGUAGGUUAUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 52546 0.72 0.863511
Target:  5'- aCGGG-GCUCAUCCugcagcgGCUGC-UGGGc -3'
miRNA:   3'- -GCCCuUGAGUAGGuua----UGGCGuACCC- -5'
5214 5' -51.4 NC_001798.1 + 134854 0.7 0.923616
Target:  5'- gGGGAggGCcCGUCCAAUacuuuGCCGUGcUGGGa -3'
miRNA:   3'- gCCCU--UGaGUAGGUUA-----UGGCGU-ACCC- -5'
5214 5' -51.4 NC_001798.1 + 126699 0.7 0.929074
Target:  5'- cCGuGGAGCUCGUCgCGAccCUGCucGUGGGg -3'
miRNA:   3'- -GC-CCUUGAGUAG-GUUauGGCG--UACCC- -5'
5214 5' -51.4 NC_001798.1 + 15216 0.7 0.939244
Target:  5'- gGGGAGCgUCcgCgGGU-CCGUGUGGGu -3'
miRNA:   3'- gCCCUUG-AGuaGgUUAuGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 152263 0.69 0.952649
Target:  5'- cCGGGAGCUCGUgCCGG-GCCgggguuccaugaGCcgGGGu -3'
miRNA:   3'- -GCCCUUGAGUA-GGUUaUGG------------CGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 13286 0.69 0.956635
Target:  5'- aGGGGcACUCGguguauUCCAuaACCGUgAUGGGg -3'
miRNA:   3'- gCCCU-UGAGU------AGGUuaUGGCG-UACCC- -5'
5214 5' -51.4 NC_001798.1 + 56961 0.69 0.956635
Target:  5'- aCGGcuGGC-CcUCCAGcACCGCGUGGGg -3'
miRNA:   3'- -GCCc-UUGaGuAGGUUaUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 32251 0.69 0.963907
Target:  5'- uGGGAGCgucgCGUCCGcguCCGgCGcUGGGg -3'
miRNA:   3'- gCCCUUGa---GUAGGUuauGGC-GU-ACCC- -5'
5214 5' -51.4 NC_001798.1 + 110325 0.68 0.967203
Target:  5'- gGGGAGgUCAUgUCGGUGCUGCugGUGGa -3'
miRNA:   3'- gCCCUUgAGUA-GGUUAUGGCG--UACCc -5'
5214 5' -51.4 NC_001798.1 + 137114 0.68 0.967203
Target:  5'- -cGGAACUCccGUCCAGaacgaACCGCAaccgcccccUGGGg -3'
miRNA:   3'- gcCCUUGAG--UAGGUUa----UGGCGU---------ACCC- -5'
5214 5' -51.4 NC_001798.1 + 150200 0.68 0.967203
Target:  5'- gGGGGGCggCA-CCGgggguguugGUGCCGCggGGGa -3'
miRNA:   3'- gCCCUUGa-GUaGGU---------UAUGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 48379 0.68 0.97028
Target:  5'- cCGcGGGGCgugCcgCCGcgACCGCAcGGGc -3'
miRNA:   3'- -GC-CCUUGa--GuaGGUuaUGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 13377 0.68 0.972867
Target:  5'- uCGGGc-CUCGUCCGAagccCCGCGcacgaucUGGGg -3'
miRNA:   3'- -GCCCuuGAGUAGGUUau--GGCGU-------ACCC- -5'
5214 5' -51.4 NC_001798.1 + 96065 0.68 0.973144
Target:  5'- gGGGAugUCAggggcCCGccGCCGCAUcaguccgcgcGGGg -3'
miRNA:   3'- gCCCUugAGUa----GGUuaUGGCGUA----------CCC- -5'
5214 5' -51.4 NC_001798.1 + 18262 0.68 0.973144
Target:  5'- cCGGGGGCcagguacgCAUCCu---CCGCggGGGu -3'
miRNA:   3'- -GCCCUUGa-------GUAGGuuauGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 102043 0.68 0.978265
Target:  5'- gCGGGGG-UC-UCCGuguCUGCGUGGGg -3'
miRNA:   3'- -GCCCUUgAGuAGGUuauGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 148008 0.67 0.980537
Target:  5'- uGGGugugGCgccCGUCCccuuccucUACCGCGUGGGc -3'
miRNA:   3'- gCCCu---UGa--GUAGGuu------AUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 101909 0.67 0.980537
Target:  5'- gGGGAGCgggaCCGGggguaACCGCAacUGGGg -3'
miRNA:   3'- gCCCUUGaguaGGUUa----UGGCGU--ACCC- -5'
5214 5' -51.4 NC_001798.1 + 139809 0.67 0.982626
Target:  5'- gCGGGAAUcaCGUCCAGgcCCaGC-UGGGg -3'
miRNA:   3'- -GCCCUUGa-GUAGGUUauGG-CGuACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.