miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 150886 0.66 0.675457
Target:  5'- gGGuCGCcccCGCaccGCCGcccccGCGCCGGGGCGc -3'
miRNA:   3'- -CC-GCGa--GCGc--CGGU-----UGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 31572 0.66 0.679291
Target:  5'- gGGCGCgccgcgcgcccccgCGCGGCCGuCGCCccGcGCGu -3'
miRNA:   3'- -CCGCGa-------------GCGCCGGUuGCGGcuC-CGCc -5'
5216 5' -62.5 NC_001798.1 + 16998 0.66 0.685033
Target:  5'- cGGCGCUUG-GGCgGAgCGCCGcgucaaAGGUaaGGg -3'
miRNA:   3'- -CCGCGAGCgCCGgUU-GCGGC------UCCG--CC- -5'
5216 5' -62.5 NC_001798.1 + 65828 0.66 0.685033
Target:  5'- uGGCGCUCacguugcCGGUgAugGCCcggaGGGUGGc -3'
miRNA:   3'- -CCGCGAGc------GCCGgUugCGGc---UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 72818 0.66 0.685033
Target:  5'- cGGCGcCUCuCGGCCGGCuaucagGCCGcacGcGCGGc -3'
miRNA:   3'- -CCGC-GAGcGCCGGUUG------CGGCu--C-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 73812 0.66 0.675457
Target:  5'- cGGaaccaGUUCGCGaCCGAUcuggaGCCGGGGgGGu -3'
miRNA:   3'- -CCg----CGAGCGCcGGUUG-----CGGCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 57165 0.66 0.675457
Target:  5'- uGGCGCcCG-GGCCGGCGCCcuccgcccaGAucacGuGCGGg -3'
miRNA:   3'- -CCGCGaGCgCCGGUUGCGG---------CU----C-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 53230 0.66 0.665849
Target:  5'- aGGgGCUccucagCGCGGCCGugGgCGuccuGCGGc -3'
miRNA:   3'- -CCgCGA------GCGCCGGUugCgGCuc--CGCC- -5'
5216 5' -62.5 NC_001798.1 + 79516 0.66 0.665849
Target:  5'- aGGCGUaUCuGCGcGCCGGCGgagacCCGGGGCc- -3'
miRNA:   3'- -CCGCG-AG-CGC-CGGUUGC-----GGCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 32029 0.66 0.665849
Target:  5'- gGGCGaC-CGCGGCCAcgggccgcuCGCCccGGCGu -3'
miRNA:   3'- -CCGC-GaGCGCCGGUu--------GCGGcuCCGCc -5'
5216 5' -62.5 NC_001798.1 + 56154 0.66 0.665849
Target:  5'- aGUGCg-GCGGCUuauAACGCCcggggGAcGGCGGg -3'
miRNA:   3'- cCGCGagCGCCGG---UUGCGG-----CU-CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 93348 0.66 0.665849
Target:  5'- cGGCcCUCcaccugaccgagGUGGaCGACGCCGGgccGGCGGa -3'
miRNA:   3'- -CCGcGAG------------CGCCgGUUGCGGCU---CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 97849 0.66 0.665849
Target:  5'- nGGCGCgggCaCGGUCAucgacaaccGCGCCGccccGGGCGu -3'
miRNA:   3'- -CCGCGa--GcGCCGGU---------UGCGGC----UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 149162 0.66 0.665849
Target:  5'- aGGCGC-CuCGGCCgGugGuCCGgugggGGGCGGc -3'
miRNA:   3'- -CCGCGaGcGCCGG-UugC-GGC-----UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 93094 0.66 0.665849
Target:  5'- gGGCGCgCGCGacGCCGggaacaaggGC-CCGgcGGGCGGg -3'
miRNA:   3'- -CCGCGaGCGC--CGGU---------UGcGGC--UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 102388 0.66 0.665849
Target:  5'- uGGCGgUCgGCGGCgAugGCCcccaccAGcGCGGc -3'
miRNA:   3'- -CCGCgAG-CGCCGgUugCGGc-----UC-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 142717 0.66 0.665849
Target:  5'- cGCGCggCGaCGGCac-CGCCG-GGCGa -3'
miRNA:   3'- cCGCGa-GC-GCCGguuGCGGCuCCGCc -5'
5216 5' -62.5 NC_001798.1 + 3008 0.66 0.675457
Target:  5'- gGGCGCgggggCGCGGCgG--GCCG-GGCu- -3'
miRNA:   3'- -CCGCGa----GCGCCGgUugCGGCuCCGcc -5'
5216 5' -62.5 NC_001798.1 + 11999 0.66 0.675457
Target:  5'- uGGUGCgUCGagcgacacaaGGUgAACGCCacggcGGGGCGGc -3'
miRNA:   3'- -CCGCG-AGCg---------CCGgUUGCGG-----CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 42335 0.66 0.675457
Target:  5'- cGGCaagCGCaGGCUGugGCCGuGGGCGu -3'
miRNA:   3'- -CCGcgaGCG-CCGGUugCGGC-UCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.