miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5218 5' -60.1 NC_001798.1 + 85303 0.66 0.773801
Target:  5'- gGGUCCgcccGCGGCCCg-CCCGcaGACc--- -3'
miRNA:   3'- -CCAGGa---CGCCGGGgaGGGC--CUGaaac -5'
5218 5' -60.1 NC_001798.1 + 79683 0.66 0.771081
Target:  5'- cGUCCcgaggcggccugcgUGCGGCCCCcgcuUCCgaCGGACg--- -3'
miRNA:   3'- cCAGG--------------ACGCCGGGG----AGG--GCCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 128199 0.66 0.764693
Target:  5'- cGGgccCCUGUGGgCUCgCCUGGACUa-- -3'
miRNA:   3'- -CCa--GGACGCCgGGGaGGGCCUGAaac -5'
5218 5' -60.1 NC_001798.1 + 44417 0.66 0.755475
Target:  5'- gGGUCCcGCGGCCCagggcgUCuuGGAg---- -3'
miRNA:   3'- -CCAGGaCGCCGGGg-----AGggCCUgaaac -5'
5218 5' -60.1 NC_001798.1 + 109071 0.66 0.746156
Target:  5'- uGUCCUgGgGGCCCCgacgCCCGccGACa--- -3'
miRNA:   3'- cCAGGA-CgCCGGGGa---GGGC--CUGaaac -5'
5218 5' -60.1 NC_001798.1 + 132123 0.66 0.736742
Target:  5'- aGGUCCUgcagGCGGCCCUgcgCCgccgggggccggCGGGCg--- -3'
miRNA:   3'- -CCAGGA----CGCCGGGGa--GG------------GCCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 75468 0.66 0.736742
Target:  5'- cGGcCCggccGCGGCCCUg-CUGGACUUc- -3'
miRNA:   3'- -CCaGGa---CGCCGGGGagGGCCUGAAac -5'
5218 5' -60.1 NC_001798.1 + 83868 0.66 0.727244
Target:  5'- gGGcCCgagGCGGCgaccCCCggCCCGGGCg--- -3'
miRNA:   3'- -CCaGGa--CGCCG----GGGa-GGGCCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 76927 0.67 0.717668
Target:  5'- cGUCC-GgGGCCCCccCCCGGAa---- -3'
miRNA:   3'- cCAGGaCgCCGGGGa-GGGCCUgaaac -5'
5218 5' -60.1 NC_001798.1 + 145558 0.67 0.717668
Target:  5'- cGUCgCgccgGCGcCCCCUCCCGGcGCUUc- -3'
miRNA:   3'- cCAG-Ga---CGCcGGGGAGGGCC-UGAAac -5'
5218 5' -60.1 NC_001798.1 + 137375 0.67 0.688564
Target:  5'- uGGUCCgGCGcaCCCCucggcguucUCCCGGGCg--- -3'
miRNA:   3'- -CCAGGaCGCc-GGGG---------AGGGCCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 142609 0.68 0.646213
Target:  5'- aGGUUCUGCGggaaauucagaucaGCCCCacCCUGGACg--- -3'
miRNA:   3'- -CCAGGACGC--------------CGGGGa-GGGCCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 5610 0.68 0.639284
Target:  5'- uGGUCCgcggGCGGCUCCgCCCcaaaggGGGCg--- -3'
miRNA:   3'- -CCAGGa---CGCCGGGGaGGG------CCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 126270 0.69 0.589864
Target:  5'- cGUCCggacgcccaaGCGGCCCCUCCCcccgaGACg--- -3'
miRNA:   3'- cCAGGa---------CGCCGGGGAGGGc----CUGaaac -5'
5218 5' -60.1 NC_001798.1 + 98605 0.69 0.57025
Target:  5'- cGGcCCcgGCGGCCCCccgcgCCuCGGGCggcgUGg -3'
miRNA:   3'- -CCaGGa-CGCCGGGGa----GG-GCCUGaa--AC- -5'
5218 5' -60.1 NC_001798.1 + 61875 0.69 0.560502
Target:  5'- aGcCCgGCGGCCCC-CUCGGGCg--- -3'
miRNA:   3'- cCaGGaCGCCGGGGaGGGCCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 22072 0.7 0.503173
Target:  5'- --cCCUGCGGCCCCgCCCc--CUUUGg -3'
miRNA:   3'- ccaGGACGCCGGGGaGGGccuGAAAC- -5'
5218 5' -60.1 NC_001798.1 + 21935 0.71 0.48462
Target:  5'- --cCCUGCGGCCCCgCCCccuuuGGGCg--- -3'
miRNA:   3'- ccaGGACGCCGGGGaGGG-----CCUGaaac -5'
5218 5' -60.1 NC_001798.1 + 456 0.72 0.422483
Target:  5'- cGGUCCcGCGGCCgCCUCCCccGCg--- -3'
miRNA:   3'- -CCAGGaCGCCGG-GGAGGGccUGaaac -5'
5218 5' -60.1 NC_001798.1 + 134652 0.73 0.365382
Target:  5'- cGG-CCUGCGGCCCCg--CGGACa--- -3'
miRNA:   3'- -CCaGGACGCCGGGGaggGCCUGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.