miRNA display CGI


Results 21 - 40 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 3' -64.2 NC_001798.1 + 86925 0.66 0.611401
Target:  5'- uCCCGCaagaGCCugCCGuCGCACgcgcgcaggCUGGAGCUc -3'
miRNA:   3'- -GGGCGg---UGG--GGCuGCGUG---------GGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 105084 0.66 0.611401
Target:  5'- aCCCGCgGCCCCG-CG-GCCCGcGuacaCCa -3'
miRNA:   3'- -GGGCGgUGGGGCuGCgUGGGC-Cuc--GG- -5'
5219 3' -64.2 NC_001798.1 + 139591 0.66 0.611401
Target:  5'- uCCCGaCCGgCCUGcCGCuCCgGGAGUUu -3'
miRNA:   3'- -GGGC-GGUgGGGCuGCGuGGgCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 28209 0.66 0.611401
Target:  5'- -gCGCCggagGCCCCGcacgcCGCGCCUGccGCCg -3'
miRNA:   3'- ggGCGG----UGGGGCu----GCGUGGGCcuCGG- -5'
5219 3' -64.2 NC_001798.1 + 102757 0.66 0.605703
Target:  5'- aCCUGCggcgcgggaaCGCUCgCGGCgggggaugugucaugGCACCCGGGGCg -3'
miRNA:   3'- -GGGCG----------GUGGG-GCUG---------------CGUGGGCCUCGg -5'
5219 3' -64.2 NC_001798.1 + 3034 0.66 0.601907
Target:  5'- uCCgGCCAgCCCCGGCacggcCGCCaGGucGCCg -3'
miRNA:   3'- -GGgCGGU-GGGGCUGc----GUGGgCCu-CGG- -5'
5219 3' -64.2 NC_001798.1 + 116787 0.66 0.601907
Target:  5'- cUCCGCgGCgCCCGACGCG---GGcGCCa -3'
miRNA:   3'- -GGGCGgUG-GGGCUGCGUgggCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 25571 0.66 0.601907
Target:  5'- aCUCGCCGCugCCgGGCGaggACCUGGccgcgGGCCg -3'
miRNA:   3'- -GGGCGGUG--GGgCUGCg--UGGGCC-----UCGG- -5'
5219 3' -64.2 NC_001798.1 + 50983 0.66 0.601907
Target:  5'- gUCCGCgcauCGCgCCGACuCGCCCGuggaggacGAGCCc -3'
miRNA:   3'- -GGGCG----GUGgGGCUGcGUGGGC--------CUCGG- -5'
5219 3' -64.2 NC_001798.1 + 51976 0.66 0.601907
Target:  5'- cCCCcCCACCCCGGC---CCCGacGCCg -3'
miRNA:   3'- -GGGcGGUGGGGCUGcguGGGCcuCGG- -5'
5219 3' -64.2 NC_001798.1 + 72131 0.66 0.601907
Target:  5'- aCCCuCCucgaaCCGGC-CACCCGG-GCCg -3'
miRNA:   3'- -GGGcGGugg--GGCUGcGUGGGCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 77937 0.66 0.601907
Target:  5'- -gCGCCACCCC-AUGCucccCCCGcucGCCg -3'
miRNA:   3'- ggGCGGUGGGGcUGCGu---GGGCcu-CGG- -5'
5219 3' -64.2 NC_001798.1 + 110359 0.66 0.601907
Target:  5'- -aUGCCACCCaacaGCaGCugGCCCaGGGGCCg -3'
miRNA:   3'- ggGCGGUGGGgc--UG-CG--UGGG-CCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 137433 0.66 0.600959
Target:  5'- aCCGggacCCGCCCCGcggggacGCGCucGCCCGGAaaucgGCg -3'
miRNA:   3'- gGGC----GGUGGGGC-------UGCG--UGGGCCU-----CGg -5'
5219 3' -64.2 NC_001798.1 + 85196 0.66 0.600959
Target:  5'- gCgUGCCGCCCgCGAgCGCGCUCGacgaggacguggaGAGCg -3'
miRNA:   3'- -GgGCGGUGGG-GCU-GCGUGGGC-------------CUCGg -5'
5219 3' -64.2 NC_001798.1 + 128615 0.66 0.599062
Target:  5'- -aCGCCgACgCCgGGCGCuucgucuuucaccaACCCGGGGaCCu -3'
miRNA:   3'- ggGCGG-UG-GGgCUGCG--------------UGGGCCUC-GG- -5'
5219 3' -64.2 NC_001798.1 + 116638 0.66 0.592432
Target:  5'- cCCCGCC-CaCCCGcUGCAUCCcgccaaucuGGuGGCCa -3'
miRNA:   3'- -GGGCGGuG-GGGCuGCGUGGG---------CC-UCGG- -5'
5219 3' -64.2 NC_001798.1 + 107216 0.66 0.592432
Target:  5'- gCCC-UCAugcCCCCGAcCGCGCCCGGcacgaaccuGGUCc -3'
miRNA:   3'- -GGGcGGU---GGGGCU-GCGUGGGCC---------UCGG- -5'
5219 3' -64.2 NC_001798.1 + 106102 0.66 0.592432
Target:  5'- aCCCGgCGCCgCGAC-CGCCgGGucuGCg -3'
miRNA:   3'- -GGGCgGUGGgGCUGcGUGGgCCu--CGg -5'
5219 3' -64.2 NC_001798.1 + 83816 0.66 0.592432
Target:  5'- aCUGCaCGgCCUGAUGCACggaCGG-GCCg -3'
miRNA:   3'- gGGCG-GUgGGGCUGCGUGg--GCCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.