miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 5' -57.7 NC_001798.1 + 52020 0.67 0.792663
Target:  5'- -gGGGUCCcuGCuguaCUGGCCCGGggUGc -3'
miRNA:   3'- agCCUAGGucCGc---GACCGGGUCaaAC- -5'
5219 5' -57.7 NC_001798.1 + 129677 0.67 0.792663
Target:  5'- gUGGucacCCGGGCGCcggGGCcCCAGUa-- -3'
miRNA:   3'- aGCCua--GGUCCGCGa--CCG-GGUCAaac -5'
5219 5' -57.7 NC_001798.1 + 112660 0.67 0.78357
Target:  5'- -aGGAcaacUCCGGGCGCauucccgacgUGGCCCucuGggUGu -3'
miRNA:   3'- agCCU----AGGUCCGCG----------ACCGGGu--CaaAC- -5'
5219 5' -57.7 NC_001798.1 + 110355 0.67 0.78357
Target:  5'- aCGGAUgCCAcccaacaGCaGCUGGCCCAGg--- -3'
miRNA:   3'- aGCCUA-GGUc------CG-CGACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 61687 0.67 0.774343
Target:  5'- uUCGGggCCaAGGCGaucCUGGCCCGc---- -3'
miRNA:   3'- -AGCCuaGG-UCCGC---GACCGGGUcaaac -5'
5219 5' -57.7 NC_001798.1 + 2797 0.67 0.774343
Target:  5'- gCGGGcUCCGcGGCaGCgccgGGCCCAGg--- -3'
miRNA:   3'- aGCCU-AGGU-CCG-CGa---CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 130083 0.67 0.774343
Target:  5'- cUCGGcgUCGGGCaCaGGCCCGGggcgUUGc -3'
miRNA:   3'- -AGCCuaGGUCCGcGaCCGGGUCa---AAC- -5'
5219 5' -57.7 NC_001798.1 + 79050 0.67 0.76499
Target:  5'- aCGGuGUCgGGGCuGCgGGCCCAGc--- -3'
miRNA:   3'- aGCC-UAGgUCCG-CGaCCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 77420 0.67 0.76499
Target:  5'- cUGGuaGUCCAGGCGCgccgGGCCUg----- -3'
miRNA:   3'- aGCC--UAGGUCCGCGa---CCGGGucaaac -5'
5219 5' -57.7 NC_001798.1 + 80356 0.67 0.759322
Target:  5'- cCGGGacgUCCcGGCGCUcgggaagcucaguccGGCCCAGg--- -3'
miRNA:   3'- aGCCU---AGGuCCGCGA---------------CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 85679 0.67 0.75552
Target:  5'- gCGGGgugcCCGGGCGCcacGCCCAGa--- -3'
miRNA:   3'- aGCCUa---GGUCCGCGac-CGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 128946 0.67 0.75552
Target:  5'- uUCGcgcCCGGGCGCguuccgGGCCCGGa--- -3'
miRNA:   3'- -AGCcuaGGUCCGCGa-----CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 116127 0.68 0.749786
Target:  5'- aUCGGGaccugguggcccacgUCgAGGCcCUGGCCCAGcuggUGg -3'
miRNA:   3'- -AGCCU---------------AGgUCCGcGACCGGGUCaa--AC- -5'
5219 5' -57.7 NC_001798.1 + 24626 0.68 0.745943
Target:  5'- -gGGAUCCuggAGGCGCUGGCggAGg--- -3'
miRNA:   3'- agCCUAGG---UCCGCGACCGggUCaaac -5'
5219 5' -57.7 NC_001798.1 + 70939 0.68 0.74498
Target:  5'- aUCGGggCgCGGuggucccgccgccGCuGCUGGCCCAGUUUc -3'
miRNA:   3'- -AGCCuaG-GUC-------------CG-CGACCGGGUCAAAc -5'
5219 5' -57.7 NC_001798.1 + 107873 0.68 0.736267
Target:  5'- uUCGGggCCAGG-GCUGGCaCCGu---- -3'
miRNA:   3'- -AGCCuaGGUCCgCGACCG-GGUcaaac -5'
5219 5' -57.7 NC_001798.1 + 121917 0.68 0.736267
Target:  5'- -aGGAgaUCCucGCGCUGGUCCAGc--- -3'
miRNA:   3'- agCCU--AGGucCGCGACCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 84752 0.68 0.726502
Target:  5'- gCGGGgccgUCGGGCGCUuuuauaGGCCCGGc--- -3'
miRNA:   3'- aGCCUa---GGUCCGCGA------CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 64519 0.68 0.716656
Target:  5'- -gGGGUCCAGGCaagGCagGGCCUGGg--- -3'
miRNA:   3'- agCCUAGGUCCG---CGa-CCGGGUCaaac -5'
5219 5' -57.7 NC_001798.1 + 103489 0.68 0.696759
Target:  5'- cUGGGUCCAGGgccaGCUcGCCCGGg--- -3'
miRNA:   3'- aGCCUAGGUCCg---CGAcCGGGUCaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.