miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5220 3' -52.3 NC_001798.1 + 32267 0.66 0.976551
Target:  5'- -gCGUCCGGCGCuggGgaGaGACGAGAAa -3'
miRNA:   3'- gaGUAGGUCGUGca-CgaC-CUGCUUUU- -5'
5220 3' -52.3 NC_001798.1 + 62224 0.66 0.973903
Target:  5'- -cCGUCgAGgACGUGCUGcGCGAGu- -3'
miRNA:   3'- gaGUAGgUCgUGCACGACcUGCUUuu -5'
5220 3' -52.3 NC_001798.1 + 111164 0.66 0.971044
Target:  5'- gCUCcccaCCGGCACGUcCuUGGGCGGGAGg -3'
miRNA:   3'- -GAGua--GGUCGUGCAcG-ACCUGCUUUU- -5'
5220 3' -52.3 NC_001798.1 + 52395 0.66 0.967968
Target:  5'- gCUCGccaCCAGCGggcugaacgcCGUGCUGGGCGc--- -3'
miRNA:   3'- -GAGUa--GGUCGU----------GCACGACCUGCuuuu -5'
5220 3' -52.3 NC_001798.1 + 52190 0.67 0.961133
Target:  5'- -gCGUCCuGgACGUGCUGG-CGGu-- -3'
miRNA:   3'- gaGUAGGuCgUGCACGACCuGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 52551 0.67 0.94909
Target:  5'- gCUCAUCCuGCAgCGgcUGCUGGGCc---- -3'
miRNA:   3'- -GAGUAGGuCGU-GC--ACGACCUGcuuuu -5'
5220 3' -52.3 NC_001798.1 + 60212 0.67 0.94909
Target:  5'- ----aCCugggcGCugGUGCUGGACGAc-- -3'
miRNA:   3'- gaguaGGu----CGugCACGACCUGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 65740 0.67 0.94909
Target:  5'- uUCAgggCCGGCAUGaUGCUGG-CGGu-- -3'
miRNA:   3'- gAGUa--GGUCGUGC-ACGACCuGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 80254 0.68 0.944579
Target:  5'- cCUCcuGUUCGGCACGcgGCUGGcCGAc-- -3'
miRNA:   3'- -GAG--UAGGUCGUGCa-CGACCuGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 121930 0.69 0.905823
Target:  5'- gCUgGUCCAGCGggcCGUGCaGGACGu--- -3'
miRNA:   3'- -GAgUAGGUCGU---GCACGaCCUGCuuuu -5'
5220 3' -52.3 NC_001798.1 + 96324 0.7 0.854787
Target:  5'- aCUCAacgcgcUCCAgguGCGCGUGCUGcGGCGGc-- -3'
miRNA:   3'- -GAGU------AGGU---CGUGCACGAC-CUGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 91136 0.7 0.846575
Target:  5'- cCUCGUCCAGCGaacGCgGGGCGAu-- -3'
miRNA:   3'- -GAGUAGGUCGUgcaCGaCCUGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 76862 0.7 0.846575
Target:  5'- --uGUCCGGC-CGUGCUGG-CGAc-- -3'
miRNA:   3'- gagUAGGUCGuGCACGACCuGCUuuu -5'
5220 3' -52.3 NC_001798.1 + 76048 0.71 0.829527
Target:  5'- -cCAUCCAgGCGCG-GCUGGAgGAc-- -3'
miRNA:   3'- gaGUAGGU-CGUGCaCGACCUgCUuuu -5'
5220 3' -52.3 NC_001798.1 + 75585 1.06 0.00812
Target:  5'- cCUCAUCCAGCACGUGCUGGACGAAAAu -3'
miRNA:   3'- -GAGUAGGUCGUGCACGACCUGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.