miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5220 5' -57.9 NC_001798.1 + 95563 0.66 0.851867
Target:  5'- cGGCCCUgGagguggcccacgAGGCggaGGcCCUGGUCa -3'
miRNA:   3'- -CCGGGAgCga----------UUCGa--CCaGGACCAGc -5'
5220 5' -57.9 NC_001798.1 + 69529 0.66 0.847185
Target:  5'- uGGCCCgcgagcUCGCgcgGGCUGGUggUGGUUu -3'
miRNA:   3'- -CCGGG------AGCGau-UCGACCAggACCAGc -5'
5220 5' -57.9 NC_001798.1 + 72588 0.66 0.831091
Target:  5'- cGuCCCUCGCgGGGCUgcGGUCCgucGUCa -3'
miRNA:   3'- cC-GGGAGCGaUUCGA--CCAGGac-CAGc -5'
5220 5' -57.9 NC_001798.1 + 135310 0.67 0.796861
Target:  5'- gGGCCCggGCcguGCUGGagcgCCUGGUg- -3'
miRNA:   3'- -CCGGGagCGauuCGACCa---GGACCAgc -5'
5220 5' -57.9 NC_001798.1 + 79941 0.67 0.778848
Target:  5'- gGGCCCa-GCUGGGCUGGgcgUCCggagcGG-CGg -3'
miRNA:   3'- -CCGGGagCGAUUCGACC---AGGa----CCaGC- -5'
5220 5' -57.9 NC_001798.1 + 52208 0.68 0.750897
Target:  5'- cGGUCCUgGCgGAGCagacGGUCCaguggcucucggUGGUCGu -3'
miRNA:   3'- -CCGGGAgCGaUUCGa---CCAGG------------ACCAGC- -5'
5220 5' -57.9 NC_001798.1 + 109243 0.69 0.702403
Target:  5'- uGGCgCCUCGCgGGGCUGcucgCCUcGUCGg -3'
miRNA:   3'- -CCG-GGAGCGaUUCGACca--GGAcCAGC- -5'
5220 5' -57.9 NC_001798.1 + 115591 0.69 0.65247
Target:  5'- aGCgCCUCGCccacGGCcgGGUCCggugGGUCGc -3'
miRNA:   3'- cCG-GGAGCGau--UCGa-CCAGGa---CCAGC- -5'
5220 5' -57.9 NC_001798.1 + 127622 0.7 0.611183
Target:  5'- cGCCCgaGCUGAggccgcuGCUGGUgCUGGUCu -3'
miRNA:   3'- cCGGGagCGAUU-------CGACCAgGACCAGc -5'
5220 5' -57.9 NC_001798.1 + 134294 0.7 0.60515
Target:  5'- gGGCCCUcuucgucccgcugCGcCUGGGCUGGgacccgcagacgggUCUGGUCGu -3'
miRNA:   3'- -CCGGGA-------------GC-GAUUCGACCa-------------GGACCAGC- -5'
5220 5' -57.9 NC_001798.1 + 109340 0.71 0.572136
Target:  5'- uGGCCCacUCGCgcguGCUGGccggCCUGGcCGc -3'
miRNA:   3'- -CCGGG--AGCGauu-CGACCa---GGACCaGC- -5'
5220 5' -57.9 NC_001798.1 + 51360 0.71 0.542503
Target:  5'- uGCCCUCGCc--GCUGuUCCUGGaCGa -3'
miRNA:   3'- cCGGGAGCGauuCGACcAGGACCaGC- -5'
5220 5' -57.9 NC_001798.1 + 100846 0.74 0.421743
Target:  5'- gGGCgCUUGCcguggggcuGCUGGUCCUGGcCGg -3'
miRNA:   3'- -CCGgGAGCGauu------CGACCAGGACCaGC- -5'
5220 5' -57.9 NC_001798.1 + 78332 0.76 0.325857
Target:  5'- aGGCCaC-CGCgGAGCUGGUCCggaccggGGUCa -3'
miRNA:   3'- -CCGG-GaGCGaUUCGACCAGGa------CCAGc -5'
5220 5' -57.9 NC_001798.1 + 75629 1.1 0.001837
Target:  5'- uGGCCCUCGCUAAGCUGGUCCUGGUCGc -3'
miRNA:   3'- -CCGGGAGCGAUUCGACCAGGACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.