Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5221 | 3' | -57.3 | NC_001798.1 | + | 74952 | 1.1 | 0.002229 |
Target: 5'- gUCCAGCGUGGAGGAUCUGACCUCGGGc -3' miRNA: 3'- -AGGUCGCACCUCCUAGACUGGAGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 26533 | 0.73 | 0.496112 |
Target: 5'- -gCGGCGUGGAGGuggugggGACCgccgCGGGg -3' miRNA: 3'- agGUCGCACCUCCuaga---CUGGa---GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 41440 | 0.7 | 0.653674 |
Target: 5'- gCgGGCGUGGGGGGUCcaUGcCCcgcCGGGg -3' miRNA: 3'- aGgUCGCACCUCCUAG--ACuGGa--GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 109431 | 0.7 | 0.662681 |
Target: 5'- cCCGGCGgcccgccugcggcUGGAGGcgC--GCCUCGGGc -3' miRNA: 3'- aGGUCGC-------------ACCUCCuaGacUGGAGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 139367 | 0.7 | 0.66368 |
Target: 5'- gUCCGGCGgGGAGGGcUCgcggGACgUcCGGGc -3' miRNA: 3'- -AGGUCGCaCCUCCU-AGa---CUGgA-GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 93121 | 0.7 | 0.693519 |
Target: 5'- cCCGGCG-GGcGGGUuugagcagcgcCUGGCCUCGGu -3' miRNA: 3'- aGGUCGCaCCuCCUA-----------GACUGGAGCCc -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 29677 | 0.69 | 0.722914 |
Target: 5'- cCCGGCG-GGAGGAggaGACC-CGGa -3' miRNA: 3'- aGGUCGCaCCUCCUagaCUGGaGCCc -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 35802 | 0.69 | 0.732574 |
Target: 5'- gUCgGGCGgcgGGGGGGg--GGCgUCGGGa -3' miRNA: 3'- -AGgUCGCa--CCUCCUagaCUGgAGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 59852 | 0.69 | 0.732574 |
Target: 5'- gUCCGGCucggaGGAGGAgucCUGGCUguggUCGGGc -3' miRNA: 3'- -AGGUCGca---CCUCCUa--GACUGG----AGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 9090 | 0.69 | 0.749746 |
Target: 5'- -aCGGCGUGGAGGGccacgggaaaGGCCgCGGGg -3' miRNA: 3'- agGUCGCACCUCCUaga-------CUGGaGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 78560 | 0.68 | 0.795599 |
Target: 5'- gCCuGCG-GGAGGcgCUGGCCgcgcgcgagcgcCGGGc -3' miRNA: 3'- aGGuCGCaCCUCCuaGACUGGa-----------GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 102412 | 0.68 | 0.797366 |
Target: 5'- aCCAGCGcGGc-GAUCUgGGCCUCcaGGGg -3' miRNA: 3'- aGGUCGCaCCucCUAGA-CUGGAG--CCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 12762 | 0.68 | 0.805247 |
Target: 5'- gCCAGUuugGGGGGAUCUGcgaagacACCgucccggCGGGa -3' miRNA: 3'- aGGUCGca-CCUCCUAGAC-------UGGa------GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 131447 | 0.68 | 0.809573 |
Target: 5'- gCUGGCGcggaugcuuuacggGGGGGAUUUGGCCgagUGGGu -3' miRNA: 3'- aGGUCGCa-------------CCUCCUAGACUGGa--GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 39464 | 0.67 | 0.823151 |
Target: 5'- aUCAGCGgagGGGGGGcCUGgcgcguGCCUCGuGGc -3' miRNA: 3'- aGGUCGCa--CCUCCUaGAC------UGGAGC-CC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 50572 | 0.67 | 0.831423 |
Target: 5'- -gCGGgGUGGGGGGUgUGuGCCgUUGGGu -3' miRNA: 3'- agGUCgCACCUCCUAgAC-UGG-AGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 30756 | 0.67 | 0.831423 |
Target: 5'- aCCcGCGUGGAGGccgaggcGGCCgugCGGGc -3' miRNA: 3'- aGGuCGCACCUCCuaga---CUGGa--GCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 133757 | 0.67 | 0.846653 |
Target: 5'- gCCcGCGUGGGGGcgCUGcuugcgcacgcacGCCUCcGGc -3' miRNA: 3'- aGGuCGCACCUCCuaGAC-------------UGGAGcCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 31803 | 0.67 | 0.847436 |
Target: 5'- cCgGGCGcGGAGGGag-GACC-CGGGg -3' miRNA: 3'- aGgUCGCaCCUCCUagaCUGGaGCCC- -5' |
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5221 | 3' | -57.3 | NC_001798.1 | + | 12579 | 0.67 | 0.847436 |
Target: 5'- cCCGGaUGUGGGGGAgacguaGGCgCUUGGGg -3' miRNA: 3'- aGGUC-GCACCUCCUaga---CUG-GAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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