miRNA display CGI


Results 61 - 80 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 138160 0.66 0.521922
Target:  5'- gCCCCC-GGGUCCUGggggcgcgaCCCGC---GGCCg -3'
miRNA:   3'- -GGGGGuUCCGGGGC---------GGGCGguuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23341 0.66 0.521922
Target:  5'- gCCgCCGGcGCgCCC-CCCGCCGGcgcucGGCCg -3'
miRNA:   3'- -GGgGGUUcCG-GGGcGGGCGGUU-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 104411 0.66 0.521922
Target:  5'- uUCgCGAGGagCCGCCgaagcacgGCCAGGGCCg -3'
miRNA:   3'- gGGgGUUCCggGGCGGg-------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 115495 0.66 0.521922
Target:  5'- aCCCCguCGAGGCCgCGaauCCGUaCGGGGCg -3'
miRNA:   3'- -GGGG--GUUCCGGgGCg--GGCG-GUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 458 0.66 0.531128
Target:  5'- gUCCCGcGGCCgCCuCCC-CCGcGGCCg -3'
miRNA:   3'- gGGGGUuCCGG-GGcGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 141787 0.66 0.531128
Target:  5'- gCUCCCAGGGgCUCaGUCUGgaCAAGGUCg -3'
miRNA:   3'- -GGGGGUUCCgGGG-CGGGCg-GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 76572 0.66 0.530205
Target:  5'- gUCCCGGcgaccGGCCCCGCgCCGUacgucgaCGGGGgCg -3'
miRNA:   3'- gGGGGUU-----CCGGGGCG-GGCG-------GUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 61469 0.66 0.530205
Target:  5'- gCCUCC-GGGCCCCGgagggcuacuuuaCCC-CCAucGCCg -3'
miRNA:   3'- -GGGGGuUCCGGGGC-------------GGGcGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 61774 0.66 0.525597
Target:  5'- uCCCCCAucaccgacuccAGGCCCaguuuCGCcuuuuccaacaugcgCCGCCGcGGGCa -3'
miRNA:   3'- -GGGGGU-----------UCCGGG-----GCG---------------GGCGGU-UCCGg -5'
5221 5' -65.2 NC_001798.1 + 34924 0.66 0.525597
Target:  5'- gCCUCCGGGGCCCCuuuCgCGCCuuucgcgaacgcgcGGcGCCg -3'
miRNA:   3'- -GGGGGUUCCGGGGc--GgGCGGu-------------UC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 149972 0.66 0.521922
Target:  5'- aCgCCGAcgggggcgcGGCgCCCGCggaCGCCGGGGCg -3'
miRNA:   3'- gGgGGUU---------CCG-GGGCGg--GCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 147172 0.67 0.476908
Target:  5'- gCCgCCCGgcgccgggcggaAGGCguccCCCGCCCggcgguccgGCCcGGGCCc -3'
miRNA:   3'- -GG-GGGU------------UCCG----GGGCGGG---------CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 27861 0.67 0.47779
Target:  5'- gCCCCGacgcgcuccggcuccGGGCCuacgccgagcccagCCGCCCGCCAuGuCCc -3'
miRNA:   3'- gGGGGU---------------UCCGG--------------GGCGGGCGGUuCcGG- -5'
5221 5' -65.2 NC_001798.1 + 74783 0.67 0.484874
Target:  5'- gCCUCGGGuccaccgcacgccGCCCCGCCCccgcagacacccGCCGGggacgcGGCCg -3'
miRNA:   3'- gGGGGUUC-------------CGGGGCGGG------------CGGUU------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 28810 0.67 0.484874
Target:  5'- uCCUCCGccgccgcGGGCCCgGgCCGUC-GGGCg -3'
miRNA:   3'- -GGGGGU-------UCCGGGgCgGGCGGuUCCGg -5'
5221 5' -65.2 NC_001798.1 + 143793 0.67 0.484874
Target:  5'- gCCCCAgagcauaaagaccAGGCCCgGgCgGCgCGcGGCCa -3'
miRNA:   3'- gGGGGU-------------UCCGGGgCgGgCG-GUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 145539 0.67 0.485763
Target:  5'- gCCCCCGcccGGccGCCCgCGUCgCGCCGGcGCCc -3'
miRNA:   3'- -GGGGGU---UC--CGGG-GCGG-GCGGUUcCGG- -5'
5221 5' -65.2 NC_001798.1 + 21632 0.67 0.485763
Target:  5'- -aUCCGGGugcgucgguGCCCCGCUCGCCGccGGCg -3'
miRNA:   3'- ggGGGUUC---------CGGGGCGGGCGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 22852 0.67 0.485763
Target:  5'- aCCCCGAacccGGaCCgUCGcCCCGCCGcgcGGCCc -3'
miRNA:   3'- gGGGGUU----CC-GG-GGC-GGGCGGUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 129484 0.67 0.476908
Target:  5'- gCCgCCu-GGCCUucgacgauaCGCUCGCCAaguuauGGGCCu -3'
miRNA:   3'- -GGgGGuuCCGGG---------GCGGGCGGU------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.