miRNA display CGI


Results 81 - 100 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 34553 0.67 0.468133
Target:  5'- cCCCCCGgagccuGGGUCCC-CCgGCgGAcGGCUc -3'
miRNA:   3'- -GGGGGU------UCCGGGGcGGgCGgUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 79437 0.67 0.468133
Target:  5'- gCCCUCGAcGCCCgCGCCCG----GGCCu -3'
miRNA:   3'- -GGGGGUUcCGGG-GCGGGCgguuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 35464 0.67 0.468133
Target:  5'- -gCCCGucugcuGGCCCgCgGCCCGUCugcuGGCCc -3'
miRNA:   3'- ggGGGUu-----CCGGG-G-CGGGCGGuu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 26183 0.67 0.464647
Target:  5'- gCUCCCGgcgcuggacggccGGGCCgCCGCCucgggcgcgggcgaCGCCAuGGCg -3'
miRNA:   3'- -GGGGGU-------------UCCGG-GGCGG--------------GCGGUuCCGg -5'
5221 5' -65.2 NC_001798.1 + 154095 0.67 0.459443
Target:  5'- gCgCCGGGGCgCgGCCggCGCCGGGGaCCc -3'
miRNA:   3'- gGgGGUUCCGgGgCGG--GCGGUUCC-GG- -5'
5221 5' -65.2 NC_001798.1 + 12290 0.67 0.476908
Target:  5'- -aCCCAcAGGCCCaggaUCGCCA-GGCCc -3'
miRNA:   3'- ggGGGU-UCCGGGgcg-GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 76880 0.67 0.476908
Target:  5'- aCCCUgcGGgccuCCCUGCCCGCgGGguggaccgaccuGGCCg -3'
miRNA:   3'- gGGGGuuCC----GGGGCGGGCGgUU------------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 22852 0.67 0.485763
Target:  5'- aCCCCGAacccGGaCCgUCGcCCCGCCGcgcGGCCc -3'
miRNA:   3'- gGGGGUU----CC-GG-GGC-GGGCGGUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21632 0.67 0.485763
Target:  5'- -aUCCGGGugcgucgguGCCCCGCUCGCCGccGGCg -3'
miRNA:   3'- ggGGGUUC---------CGGGGCGGGCGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 145539 0.67 0.485763
Target:  5'- gCCCCCGcccGGccGCCCgCGUCgCGCCGGcGCCc -3'
miRNA:   3'- -GGGGGU---UC--CGGG-GCGG-GCGGUUcCGG- -5'
5221 5' -65.2 NC_001798.1 + 143793 0.67 0.484874
Target:  5'- gCCCCAgagcauaaagaccAGGCCCgGgCgGCgCGcGGCCa -3'
miRNA:   3'- gGGGGU-------------UCCGGGgCgGgCG-GUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28810 0.67 0.484874
Target:  5'- uCCUCCGccgccgcGGGCCCgGgCCGUC-GGGCg -3'
miRNA:   3'- -GGGGGU-------UCCGGGgCgGGCGGuUCCGg -5'
5221 5' -65.2 NC_001798.1 + 74783 0.67 0.484874
Target:  5'- gCCUCGGGuccaccgcacgccGCCCCGCCCccgcagacacccGCCGGggacgcGGCCg -3'
miRNA:   3'- gGGGGUUC-------------CGGGGCGGG------------CGGUU------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 27861 0.67 0.47779
Target:  5'- gCCCCGacgcgcuccggcuccGGGCCuacgccgagcccagCCGCCCGCCAuGuCCc -3'
miRNA:   3'- gGGGGU---------------UCCGG--------------GGCGGGCGGUuCcGG- -5'
5221 5' -65.2 NC_001798.1 + 147172 0.67 0.476908
Target:  5'- gCCgCCCGgcgccgggcggaAGGCguccCCCGCCCggcgguccgGCCcGGGCCc -3'
miRNA:   3'- -GG-GGGU------------UCCG----GGGCGGG---------CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 129484 0.67 0.476908
Target:  5'- gCCgCCu-GGCCUucgacgauaCGCUCGCCAaguuauGGGCCu -3'
miRNA:   3'- -GGgGGuuCCGGG---------GCGGGCGGU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 31918 0.67 0.476908
Target:  5'- gCCCCGcGGCCUCGuCCuCGCCucuuccuccGCCg -3'
miRNA:   3'- gGGGGUuCCGGGGC-GG-GCGGuuc------CGG- -5'
5221 5' -65.2 NC_001798.1 + 142108 0.67 0.476908
Target:  5'- aCCCCAGGGCgUCGCUaacgaGCgCGcuGCCg -3'
miRNA:   3'- gGGGGUUCCGgGGCGGg----CG-GUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 89103 0.67 0.476908
Target:  5'- cCCCCCAccucgaucuccAGGuaguCCCgGUCCGCCuccAGGUg -3'
miRNA:   3'- -GGGGGU-----------UCC----GGGgCGGGCGGu--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 86902 0.67 0.476908
Target:  5'- aCCCCGgcguggagcgccGGGCCUCccgcaagaGCCUGCCGucgcacgcgcgcAGGCUg -3'
miRNA:   3'- gGGGGU------------UCCGGGG--------CGGGCGGU------------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.