miRNA display CGI


Results 21 - 40 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 59196 0.78 0.092277
Target:  5'- cCCUCCGAGGCaguguucgccgcuCCCGCCCGCgacccCGGGGCUg -3'
miRNA:   3'- -GGGGGUUCCG-------------GGGCGGGCG-----GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 80573 0.78 0.084599
Target:  5'- cUCCCCGAGGCCCC-CCaCGCCcucuaccgacccacGGGCCa -3'
miRNA:   3'- -GGGGGUUCCGGGGcGG-GCGGu-------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28968 0.78 0.085871
Target:  5'- gCCCCGccGCUCCGCCCGCCccagGGGGCg -3'
miRNA:   3'- gGGGGUucCGGGGCGGGCGG----UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 4114 0.77 0.112377
Target:  5'- gCCCugggcgggcucggCCGGGGCgCCGCCC-CCGGGGCCc -3'
miRNA:   3'- -GGG-------------GGUUCCGgGGCGGGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25139 0.77 0.109925
Target:  5'- cCCCCCGccccgcGGccGCCCCuCCCGCgGGGGCCg -3'
miRNA:   3'- -GGGGGU------UC--CGGGGcGGGCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 149805 0.77 0.109925
Target:  5'- gCUCCCAccaGCCCCGCCCGCagaggaaGAGGCg -3'
miRNA:   3'- -GGGGGUuc-CGGGGCGGGCGg------UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 108482 0.77 0.099626
Target:  5'- cUCCCCGAGGCggggcccacguCCCGucccCCCGCCGAGGUg -3'
miRNA:   3'- -GGGGGUUCCG-----------GGGC----GGGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 47858 0.77 0.107261
Target:  5'- cCCCCgGGGGCCCCGUgggCGCCGgcGGGCg -3'
miRNA:   3'- -GGGGgUUCCGGGGCGg--GCGGU--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 5560 0.77 0.109925
Target:  5'- gCUCCCGuuGGcCCCCGCCgGCCccaaaGGGGCCg -3'
miRNA:   3'- -GGGGGUu-CC-GGGGCGGgCGG-----UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 132126 0.77 0.109925
Target:  5'- uCCUgCAGgcGGCCCUGCgCCGCCGgGGGCCg -3'
miRNA:   3'- -GGGgGUU--CCGGGGCG-GGCGGU-UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 109072 0.77 0.104657
Target:  5'- gUCCUgGGGGCCCCgacGCCCGCCGAcaacGGCUc -3'
miRNA:   3'- -GGGGgUUCCGGGG---CGGGCGGUU----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 45579 0.77 0.112652
Target:  5'- gCCCCCAaacgccAGGCCUCG-UCGaCCGAGGCCc -3'
miRNA:   3'- -GGGGGU------UCCGGGGCgGGC-GGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 152638 0.77 0.107261
Target:  5'- cCCCCCGGcGCCCCGCCgGCgc-GGCCc -3'
miRNA:   3'- -GGGGGUUcCGGGGCGGgCGguuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21934 0.77 0.099626
Target:  5'- aCCCUgcGGCCCCGCCC-CCuuuGGGCg -3'
miRNA:   3'- gGGGGuuCCGGGGCGGGcGGu--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 25065 0.77 0.112652
Target:  5'- -gCgCAAGaGCCCCGCCCcgGCCAGGGCg -3'
miRNA:   3'- ggGgGUUC-CGGGGCGGG--CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 9531 0.77 0.102112
Target:  5'- gCCCgucgCCGAGGCCcggcuuuuaaCCGCCCGCCAGGagcGCCu -3'
miRNA:   3'- -GGG----GGUUCCGG----------GGCGGGCGGUUC---CGG- -5'
5221 5' -65.2 NC_001798.1 + 135765 0.77 0.112652
Target:  5'- uCCUCCGGcggccGGCCgCCgGCCCGCCGgaggAGGCCg -3'
miRNA:   3'- -GGGGGUU-----CCGG-GG-CGGGCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 152542 0.77 0.107261
Target:  5'- cCCCCCucucggggcGGCCCCGUCC-CCGGGGaCCa -3'
miRNA:   3'- -GGGGGuu-------CCGGGGCGGGcGGUUCC-GG- -5'
5221 5' -65.2 NC_001798.1 + 123404 0.77 0.112377
Target:  5'- cCCCCCGGgagccgcGGCCCCGCCgGgucaCCGGGGCg -3'
miRNA:   3'- -GGGGGUU-------CCGGGGCGGgC----GGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 11040 0.77 0.099626
Target:  5'- uCCCCCcGGGCCCCGCCCauccauuacccGCCucccauGCCa -3'
miRNA:   3'- -GGGGGuUCCGGGGCGGG-----------CGGuuc---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.