miRNA display CGI


Results 41 - 60 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 22071 0.76 0.130382
Target:  5'- aCCCUgcGGCCCCGCCC-CCuuugGGGCg -3'
miRNA:   3'- gGGGGuuCCGGGGCGGGcGGu---UCCGg -5'
5221 5' -65.2 NC_001798.1 + 83749 0.76 0.1233
Target:  5'- gCCCCCAGaaacaGCCCCGCCgccagcaacagaagCGCCGggGGGCCc -3'
miRNA:   3'- -GGGGGUUc----CGGGGCGG--------------GCGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28365 0.76 0.124203
Target:  5'- cCCCCCGcGuCCCCGCCCGCgGAcGcGCCg -3'
miRNA:   3'- -GGGGGUuCcGGGGCGGGCGgUU-C-CGG- -5'
5221 5' -65.2 NC_001798.1 + 21461 0.76 0.118296
Target:  5'- cCCCCCGuc-CCCCGCCCGUCcccccGGCCg -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 43003 0.76 0.120921
Target:  5'- gCCCCCGAcGGCCaggCCGCCCggggggaGCgCGGGGCCc -3'
miRNA:   3'- -GGGGGUU-CCGG---GGCGGG-------CG-GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 98682 0.76 0.118296
Target:  5'- cCCCCCGucccGaGCCCCGCgaCCaCCAAGGCCc -3'
miRNA:   3'- -GGGGGUu---C-CGGGGCG--GGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 148674 0.76 0.133577
Target:  5'- aCCCCCAGGGUCUgGCCgGCCAGacGuGCUg -3'
miRNA:   3'- -GGGGGUUCCGGGgCGGgCGGUU--C-CGG- -5'
5221 5' -65.2 NC_001798.1 + 25176 0.76 0.124203
Target:  5'- gCCCCCc--GCCCCGCcgacgccgCCGCCGcGGCCg -3'
miRNA:   3'- -GGGGGuucCGGGGCG--------GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 127945 0.76 0.119165
Target:  5'- gCCCCGggcgaaaAGGCCCgGCCCGCguccccggcccucucUGAGGCCu -3'
miRNA:   3'- gGGGGU-------UCCGGGgCGGGCG---------------GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 24482 0.76 0.129438
Target:  5'- gCCCUggGGCgccugagcgccgcgCCCGCCUccgcgccgGCCGGGGCCg -3'
miRNA:   3'- gGGGGuuCCG--------------GGGCGGG--------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 487 0.76 0.130382
Target:  5'- uCCCCCGc-GCCCCGCCC-CgGGGGCUu -3'
miRNA:   3'- -GGGGGUucCGGGGCGGGcGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 63350 0.75 0.141541
Target:  5'- gCCgCCAGGGCCCCcggacucaggauagaGCuguCCGUCGGGGCCu -3'
miRNA:   3'- -GGgGGUUCCGGGG---------------CG---GGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 146 0.75 0.150658
Target:  5'- uCCCCCGcGGGCgCCGCCCcuccccccgcgcGCCGcgGGGCUg -3'
miRNA:   3'- -GGGGGU-UCCGgGGCGGG------------CGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 74735 0.75 0.14709
Target:  5'- gCCCUgGAGGggaCCCCGCCCGCgAAgcccucGGCCc -3'
miRNA:   3'- -GGGGgUUCC---GGGGCGGGCGgUU------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 82003 0.75 0.14709
Target:  5'- uCCCCgGGGGCgaCCG-CCGCCGcGGCCg -3'
miRNA:   3'- -GGGGgUUCCGg-GGCgGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 151104 0.75 0.143599
Target:  5'- cCCCCCGcccgacCCCCGCCCGCCcucaccgucGGCCa -3'
miRNA:   3'- -GGGGGUucc---GGGGCGGGCGGuu-------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 33210 0.75 0.138171
Target:  5'- aCCCCCGAGGCCUguugGUCUuuaucauagaacagaGCCGGGGCCc -3'
miRNA:   3'- -GGGGGUUCCGGGg---CGGG---------------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 81911 0.75 0.140184
Target:  5'- gCCCCUuccgcccGGCCCCGCCUcgGCUcgcGGGGCCu -3'
miRNA:   3'- -GGGGGuu-----CCGGGGCGGG--CGG---UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 91958 0.75 0.144986
Target:  5'- aCCCC-GGGCCCC-CCCGuCCGgcgcgauccgguggcGGGCCa -3'
miRNA:   3'- gGGGGuUCCGGGGcGGGC-GGU---------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 109705 0.75 0.14709
Target:  5'- gCgCCCucGGCCgagcagcgggaaCgCGCCCGCCGGGGCCu -3'
miRNA:   3'- -GgGGGuuCCGG------------G-GCGGGCGGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.