Results 61 - 80 of 495 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5221 | 5' | -65.2 | NC_001798.1 | + | 108685 | 0.75 | 0.15803 |
Target: 5'- gCCCCCGGGGCC--GCCCGCggggacacCGAGGCa -3' miRNA: 3'- -GGGGGUUCCGGggCGGGCG--------GUUCCGg -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 33210 | 0.75 | 0.138171 |
Target: 5'- aCCCCCGAGGCCUguugGUCUuuaucauagaacagaGCCGGGGCCc -3' miRNA: 3'- -GGGGGUUCCGGGg---CGGG---------------CGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 109705 | 0.75 | 0.14709 |
Target: 5'- gCgCCCucGGCCgagcagcgggaaCgCGCCCGCCGGGGCCu -3' miRNA: 3'- -GgGGGuuCCGG------------G-GCGGGCGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 74735 | 0.75 | 0.14709 |
Target: 5'- gCCCUgGAGGggaCCCCGCCCGCgAAgcccucGGCCc -3' miRNA: 3'- -GGGGgUUCC---GGGGCGGGCGgUU------CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 91958 | 0.75 | 0.144986 |
Target: 5'- aCCCC-GGGCCCC-CCCGuCCGgcgcgauccgguggcGGGCCa -3' miRNA: 3'- gGGGGuUCCGGGGcGGGC-GGU---------------UCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 70932 | 0.74 | 0.1697 |
Target: 5'- aCCCCCGAucggggcgcgguGGUCCCG-CCGCCGcugcuGGCCc -3' miRNA: 3'- -GGGGGUU------------CCGGGGCgGGCGGUu----CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 145497 | 0.74 | 0.165727 |
Target: 5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3' miRNA: 3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 69446 | 0.74 | 0.182136 |
Target: 5'- uCCUCCugGGGGCCCUGUCCcCCAaaagcaccGGGCCg -3' miRNA: 3'- -GGGGG--UUCCGGGGCGGGcGGU--------UCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 54527 | 0.74 | 0.165727 |
Target: 5'- cUCCCCGAGcCCCCGCaCGUCGAcgcGGCCg -3' miRNA: 3'- -GGGGGUUCcGGGGCGgGCGGUU---CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 23810 | 0.74 | 0.1697 |
Target: 5'- -gCCCGGGGCCggccccCCGCCC-CCGGGGCg -3' miRNA: 3'- ggGGGUUCCGG------GGCGGGcGGUUCCGg -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 51977 | 0.74 | 0.165727 |
Target: 5'- cCCCCCAccccGGCCCCGa-CGCCGcGGUCu -3' miRNA: 3'- -GGGGGUu---CCGGGGCggGCGGUuCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 21335 | 0.74 | 0.165727 |
Target: 5'- gCCCCCc-GGCCCCccgGCCCGUCcccccGGCCc -3' miRNA: 3'- -GGGGGuuCCGGGG---CGGGCGGuu---CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 134983 | 0.74 | 0.165727 |
Target: 5'- gCCUgGGGGCCUgGCCCgcggugggcGCCAGGGUCg -3' miRNA: 3'- gGGGgUUCCGGGgCGGG---------CGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 145413 | 0.74 | 0.165727 |
Target: 5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3' miRNA: 3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 103705 | 0.74 | 0.165727 |
Target: 5'- aCCCaCGGGGCCCgccguuguugcgUGUCCGCCGacguccGGGCCg -3' miRNA: 3'- gGGG-GUUCCGGG------------GCGGGCGGU------UCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 29391 | 0.74 | 0.161837 |
Target: 5'- aCCaCUCAGGGCCgCGCCgGCgGGGcGCCg -3' miRNA: 3'- -GG-GGGUUCCGGgGCGGgCGgUUC-CGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 1336 | 0.74 | 0.1697 |
Target: 5'- uCCCgCCGcGGCCCgCGCagcuCCGCCG-GGCCg -3' miRNA: 3'- -GGG-GGUuCCGGG-GCG----GGCGGUuCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 145455 | 0.74 | 0.165727 |
Target: 5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3' miRNA: 3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 117017 | 0.74 | 0.173759 |
Target: 5'- uCCCCCu-GGUCCC-CCCgGCCcugGGGGCCa -3' miRNA: 3'- -GGGGGuuCCGGGGcGGG-CGG---UUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 122009 | 0.74 | 0.173759 |
Target: 5'- gCCUCGGGGCUCCGCCagggCGCCcuGGUCc -3' miRNA: 3'- gGGGGUUCCGGGGCGG----GCGGuuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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