miRNA display CGI


Results 101 - 120 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 153430 0.73 0.209439
Target:  5'- aCCCCCGucGGGCCaggCGCgCgGCCGucucccAGGCCa -3'
miRNA:   3'- -GGGGGU--UCCGGg--GCG-GgCGGU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147294 0.73 0.209439
Target:  5'- cCUCCCGGGccGCCCCGCUC-CCG-GGCCc -3'
miRNA:   3'- -GGGGGUUC--CGGGGCGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 75028 0.73 0.186457
Target:  5'- gCgCCCAagaagaAGGcCCCCGUcgCCGCCGAGGUCc -3'
miRNA:   3'- -GgGGGU------UCC-GGGGCG--GGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 51156 0.73 0.204655
Target:  5'- aCCCC-GGGUCCCgacGCgCGuCCGAGGCCc -3'
miRNA:   3'- gGGGGuUCCGGGG---CGgGC-GGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 57670 0.73 0.194916
Target:  5'- gCCCCAcaggcccacggcuAGGCCCa-CCCGuCCAAgGGCCa -3'
miRNA:   3'- gGGGGU-------------UCCGGGgcGGGC-GGUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 62259 0.73 0.204655
Target:  5'- gCCCCGAGccgauCCCagGCCCGCCGGgcGGCCc -3'
miRNA:   3'- gGGGGUUCc----GGGg-CGGGCGGUU--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 25453 0.73 0.195371
Target:  5'- cCCCCCGGcGGCg-CGCCCGCCGccuucGGCCc -3'
miRNA:   3'- -GGGGGUU-CCGggGCGGGCGGUu----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 58914 0.73 0.199966
Target:  5'- cUCCCCGAGGCUCCaCaggGCCAcGGCCg -3'
miRNA:   3'- -GGGGGUUCCGGGGcGgg-CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 86070 0.73 0.185151
Target:  5'- aCCCCCGccgucugggagucgGGGCCCCGgCUGCgCGccGCCg -3'
miRNA:   3'- -GGGGGU--------------UCCGGGGCgGGCG-GUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 147016 0.73 0.209439
Target:  5'- aCCCCCGggcGGGCCggggcUUGgCCGCCGAGGUg -3'
miRNA:   3'- -GGGGGU---UCCGG-----GGCgGGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 23922 0.73 0.214319
Target:  5'- gCCUCGGGcGCCCCggcGCCCGUguGGGCg -3'
miRNA:   3'- gGGGGUUC-CGGGG---CGGGCGguUCCGg -5'
5221 5' -65.2 NC_001798.1 + 149139 0.73 0.190868
Target:  5'- cCCCCCAccuccCCCUGCCC-CCGAGGCg -3'
miRNA:   3'- -GGGGGUucc--GGGGCGGGcGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 23631 0.72 0.229546
Target:  5'- aCCCCCGcggcgaccgcGGGCCgCCuggaGCgCCGCCG-GGCCc -3'
miRNA:   3'- -GGGGGU----------UCCGG-GG----CG-GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21795 0.72 0.227465
Target:  5'- cCCCCCGuccGGGCCCgccucggggcggaGCCCGCgGgaugacgcGGGCCc -3'
miRNA:   3'- -GGGGGU---UCCGGGg------------CGGGCGgU--------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 42738 0.72 0.231645
Target:  5'- -gCCgAGGGCCCguCGCCCGCaCAgacgggcggcgcgcgGGGCCg -3'
miRNA:   3'- ggGGgUUCCGGG--GCGGGCG-GU---------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 124018 0.72 0.229546
Target:  5'- uCCCCCGGGcaGCCggGCCCGCCAuuuaggauGGCUg -3'
miRNA:   3'- -GGGGGUUC--CGGggCGGGCGGUu-------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 86824 0.72 0.224371
Target:  5'- gCCCCCGucGCUCCGgcuCCCgGCCcGGGCCc -3'
miRNA:   3'- -GGGGGUucCGGGGC---GGG-CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 86207 0.72 0.224371
Target:  5'- gCCCCA--GCCCCaGCCCGaCCuggaccuGGGCCc -3'
miRNA:   3'- gGGGGUucCGGGG-CGGGC-GGu------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 76283 0.72 0.224371
Target:  5'- cCCCCCcccGCCCCcCCuCGCCAccagcccccAGGCCa -3'
miRNA:   3'- -GGGGGuucCGGGGcGG-GCGGU---------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 34977 0.72 0.229546
Target:  5'- gCCgCCGaggugcggGGGCCCCuCCgGCCGGGGCg -3'
miRNA:   3'- -GGgGGU--------UCCGGGGcGGgCGGUUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.