miRNA display CGI


Results 61 - 80 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 82003 0.75 0.14709
Target:  5'- uCCCCgGGGGCgaCCG-CCGCCGcGGCCg -3'
miRNA:   3'- -GGGGgUUCCGg-GGCgGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 154484 0.75 0.150658
Target:  5'- uCCCCCGcGGGCgCCGCCCcuccccccgcgcGCCGcgGGGCUg -3'
miRNA:   3'- -GGGGGU-UCCGgGGCGGG------------CGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 146 0.75 0.150658
Target:  5'- uCCCCCGcGGGCgCCGCCCcuccccccgcgcGCCGcgGGGCUg -3'
miRNA:   3'- -GGGGGU-UCCGgGGCGGG------------CGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 79467 0.75 0.15653
Target:  5'- uCCCCCGAGGgccacgaggucgaCCCGCagcugcugcgCCGCCGGGGCg -3'
miRNA:   3'- -GGGGGUUCCg------------GGGCG----------GGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 108685 0.75 0.15803
Target:  5'- gCCCCCGGGGCC--GCCCGCggggacacCGAGGCa -3'
miRNA:   3'- -GGGGGUUCCGGggCGGGCG--------GUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 29391 0.74 0.161837
Target:  5'- aCCaCUCAGGGCCgCGCCgGCgGGGcGCCg -3'
miRNA:   3'- -GG-GGGUUCCGGgGCGGgCGgUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 145455 0.74 0.165727
Target:  5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3'
miRNA:   3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 103705 0.74 0.165727
Target:  5'- aCCCaCGGGGCCCgccguuguugcgUGUCCGCCGacguccGGGCCg -3'
miRNA:   3'- gGGG-GUUCCGGG------------GCGGGCGGU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 145413 0.74 0.165727
Target:  5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3'
miRNA:   3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21335 0.74 0.165727
Target:  5'- gCCCCCc-GGCCCCccgGCCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGuuCCGGGG---CGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 112181 0.74 0.165727
Target:  5'- uCCCCCAcGGGCCgCaCGuCCCGC--AGGCCg -3'
miRNA:   3'- -GGGGGU-UCCGG-G-GC-GGGCGguUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 145497 0.74 0.165727
Target:  5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3'
miRNA:   3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 134983 0.74 0.165727
Target:  5'- gCCUgGGGGCCUgGCCCgcggugggcGCCAGGGUCg -3'
miRNA:   3'- gGGGgUUCCGGGgCGGG---------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 54527 0.74 0.165727
Target:  5'- cUCCCCGAGcCCCCGCaCGUCGAcgcGGCCg -3'
miRNA:   3'- -GGGGGUUCcGGGGCGgGCGGUU---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 51977 0.74 0.165727
Target:  5'- cCCCCCAccccGGCCCCGa-CGCCGcGGUCu -3'
miRNA:   3'- -GGGGGUu---CCGGGGCggGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23810 0.74 0.1697
Target:  5'- -gCCCGGGGCCggccccCCGCCC-CCGGGGCg -3'
miRNA:   3'- ggGGGUUCCGG------GGCGGGcGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 1336 0.74 0.1697
Target:  5'- uCCCgCCGcGGCCCgCGCagcuCCGCCG-GGCCg -3'
miRNA:   3'- -GGG-GGUuCCGGG-GCG----GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 70932 0.74 0.1697
Target:  5'- aCCCCCGAucggggcgcgguGGUCCCG-CCGCCGcugcuGGCCc -3'
miRNA:   3'- -GGGGGUU------------CCGGGGCgGGCGGUu----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 122009 0.74 0.173759
Target:  5'- gCCUCGGGGCUCCGCCagggCGCCcuGGUCc -3'
miRNA:   3'- gGGGGUUCCGGGGCGG----GCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 127124 0.74 0.173759
Target:  5'- cCCCCCGGGGguuugggaugcCCgCCGCCCuGaCCAcGGCCa -3'
miRNA:   3'- -GGGGGUUCC-----------GG-GGCGGG-C-GGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.