miRNA display CGI


Results 81 - 100 of 495 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 122009 0.74 0.173759
Target:  5'- gCCUCGGGGCUCCGCCagggCGCCcuGGUCc -3'
miRNA:   3'- gGGGGUUCCGGGGCGG----GCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 121112 0.74 0.177903
Target:  5'- gCCCCUuccggcaccgggAAGGgCUCGCaCCGCCGgccGGGCCa -3'
miRNA:   3'- -GGGGG------------UUCCgGGGCG-GGCGGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 3962 0.74 0.179586
Target:  5'- gCgCCgGAGGCCgCGUcggcguccagcucgaCCGCCGGGGCCg -3'
miRNA:   3'- -GgGGgUUCCGGgGCG---------------GGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 86434 0.74 0.182136
Target:  5'- aCCCCGAGGCgCaGCCCGgggaCgGGGGCCg -3'
miRNA:   3'- gGGGGUUCCGgGgCGGGC----GgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 98747 0.74 0.182136
Target:  5'- -gCCCGAGGCgacCCCGCCCcCCGAcGCCa -3'
miRNA:   3'- ggGGGUUCCG---GGGCGGGcGGUUcCGG- -5'
5221 5' -65.2 NC_001798.1 + 25318 0.74 0.182136
Target:  5'- gCCCUgGAGGCCUacugCGCCCcgcggGCCGuGGCCg -3'
miRNA:   3'- -GGGGgUUCCGGG----GCGGG-----CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 69446 0.74 0.182136
Target:  5'- uCCUCCugGGGGCCCUGUCCcCCAaaagcaccGGGCCg -3'
miRNA:   3'- -GGGGG--UUCCGGGGCGGGcGGU--------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 86070 0.73 0.185151
Target:  5'- aCCCCCGccgucugggagucgGGGCCCCGgCUGCgCGccGCCg -3'
miRNA:   3'- -GGGGGU--------------UCCGGGGCgGGCG-GUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 105403 0.73 0.186457
Target:  5'- uUCUCCAGGGCCgCCGCggCCGCgGugcgcuGGGCCu -3'
miRNA:   3'- -GGGGGUUCCGG-GGCG--GGCGgU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 75028 0.73 0.186457
Target:  5'- gCgCCCAagaagaAGGcCCCCGUcgCCGCCGAGGUCc -3'
miRNA:   3'- -GgGGGU------UCC-GGGGCG--GGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 31460 0.73 0.190868
Target:  5'- uCCCCCGccGUCuCCGCgCCGCCccgcGGGCCc -3'
miRNA:   3'- -GGGGGUucCGG-GGCG-GGCGGu---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 36401 0.73 0.190868
Target:  5'- gCgCCGGGGCCCC-CCUGCCGggcgGGGCg -3'
miRNA:   3'- gGgGGUUCCGGGGcGGGCGGU----UCCGg -5'
5221 5' -65.2 NC_001798.1 + 149139 0.73 0.190868
Target:  5'- cCCCCCAccuccCCCUGCCC-CCGAGGCg -3'
miRNA:   3'- -GGGGGUucc--GGGGCGGGcGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 73896 0.73 0.190868
Target:  5'- -aCgUggGGCCCCGCgacgugcuguCCGCgGAGGCCa -3'
miRNA:   3'- ggGgGuuCCGGGGCG----------GGCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 72499 0.73 0.190868
Target:  5'- gCgCCUggGGCCCUgGCgCC-CCGAGGCCa -3'
miRNA:   3'- -GgGGGuuCCGGGG-CG-GGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 148897 0.73 0.192658
Target:  5'- cCCCCCAuccccGGCCCC-CCUGCgCGggggagcugcaucaaAGGCCa -3'
miRNA:   3'- -GGGGGUu----CCGGGGcGGGCG-GU---------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 20758 0.73 0.19401
Target:  5'- cCCCCCGAGcuCCCgcggggagcgacggCGCCCGCCGcguAGGUCu -3'
miRNA:   3'- -GGGGGUUCc-GGG--------------GCGGGCGGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 57670 0.73 0.194916
Target:  5'- gCCCCAcaggcccacggcuAGGCCCa-CCCGuCCAAgGGCCa -3'
miRNA:   3'- gGGGGU-------------UCCGGGgcGGGC-GGUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 25453 0.73 0.195371
Target:  5'- cCCCCCGGcGGCg-CGCCCGCCGccuucGGCCc -3'
miRNA:   3'- -GGGGGUU-CCGggGCGGGCGGUu----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 98607 0.73 0.195371
Target:  5'- gCCCCGGcGGCCCC-CCgCGCCucGGGCg -3'
miRNA:   3'- gGGGGUU-CCGGGGcGG-GCGGu-UCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.