miRNA display CGI


Results 101 - 120 of 495 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 58914 0.73 0.199966
Target:  5'- cUCCCCGAGGCUCCaCaggGCCAcGGCCg -3'
miRNA:   3'- -GGGGGUUCCGGGGcGgg-CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 4183 0.73 0.199966
Target:  5'- gCgCCgAGGGUCCCGCCCGCgGcguGGUCu -3'
miRNA:   3'- -GgGGgUUCCGGGGCGGGCGgUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 39527 0.73 0.204182
Target:  5'- uCCCCUccGcGCCgCGCCucgccguggguggCGCCGGGGCCg -3'
miRNA:   3'- -GGGGGuuC-CGGgGCGG-------------GCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 51156 0.73 0.204655
Target:  5'- aCCCC-GGGUCCCgacGCgCGuCCGAGGCCc -3'
miRNA:   3'- gGGGGuUCCGGGG---CGgGC-GGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 49877 0.73 0.204655
Target:  5'- cCCCUCAcGaCCCCGCCCGUCcugAGGGCa -3'
miRNA:   3'- -GGGGGUuCcGGGGCGGGCGG---UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 62259 0.73 0.204655
Target:  5'- gCCCCGAGccgauCCCagGCCCGCCGGgcGGCCc -3'
miRNA:   3'- gGGGGUUCc----GGGg-CGGGCGGUU--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 89442 0.73 0.204655
Target:  5'- gCCUCCuugucGAGGCCCCGaaaCCGCCccuGGGUg -3'
miRNA:   3'- -GGGGG-----UUCCGGGGCg--GGCGGu--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 147294 0.73 0.209439
Target:  5'- cCUCCCGGGccGCCCCGCUC-CCG-GGCCc -3'
miRNA:   3'- -GGGGGUUC--CGGGGCGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147016 0.73 0.209439
Target:  5'- aCCCCCGggcGGGCCggggcUUGgCCGCCGAGGUg -3'
miRNA:   3'- -GGGGGU---UCCGG-----GGCgGGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 153430 0.73 0.209439
Target:  5'- aCCCCCGucGGGCCaggCGCgCgGCCGucucccAGGCCa -3'
miRNA:   3'- -GGGGGU--UCCGGg--GCG-GgCGGU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23922 0.73 0.214319
Target:  5'- gCCUCGGGcGCCCCggcGCCCGUguGGGCg -3'
miRNA:   3'- gGGGGUUC-CGGGG---CGGGCGguUCCGg -5'
5221 5' -65.2 NC_001798.1 + 2108 0.73 0.216298
Target:  5'- gCCCCCGgcgcggcccgcggccAGGUCCuCGCCCGgCAGcGGCg -3'
miRNA:   3'- -GGGGGU---------------UCCGGG-GCGGGCgGUU-CCGg -5'
5221 5' -65.2 NC_001798.1 + 57848 0.72 0.218794
Target:  5'- aCCCUAAcagugauGGgCCCGCCUGCCccccuGGCCu -3'
miRNA:   3'- gGGGGUU-------CCgGGGCGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 94974 0.72 0.219296
Target:  5'- cCCCCCAgcgugcAGGCggCGgCCGCCuGGGCCc -3'
miRNA:   3'- -GGGGGU------UCCGggGCgGGCGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 83407 0.72 0.219296
Target:  5'- aCCCCGAGG-UCCGUCagCGCCGcGGCCu -3'
miRNA:   3'- gGGGGUUCCgGGGCGG--GCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 81954 0.72 0.222838
Target:  5'- gCCCCCAcGcucgcgcccaucccGCCuCCGCCCGCCGAaggagcGGUCg -3'
miRNA:   3'- -GGGGGUuC--------------CGG-GGCGGGCGGUU------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 86824 0.72 0.224371
Target:  5'- gCCCCCGucGCUCCGgcuCCCgGCCcGGGCCc -3'
miRNA:   3'- -GGGGGUucCGGGGC---GGG-CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 82313 0.72 0.224371
Target:  5'- gCCCgGAGGCCCgguUGCCCGCC---GCCc -3'
miRNA:   3'- gGGGgUUCCGGG---GCGGGCGGuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 5738 0.72 0.224371
Target:  5'- -gCCCGGGGCCCgcgucaucccgCGCuCCGCCccaaagggggcGGGGCCg -3'
miRNA:   3'- ggGGGUUCCGGG-----------GCG-GGCGG-----------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 86207 0.72 0.224371
Target:  5'- gCCCCA--GCCCCaGCCCGaCCuggaccuGGGCCc -3'
miRNA:   3'- gGGGGUucCGGGG-CGGGC-GGu------UCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.