miRNA display CGI


Results 81 - 100 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 54462 0.67 0.476908
Target:  5'- uCCCCCGGGcucGCCCCcacucgaCCC-CCGcGGCCc -3'
miRNA:   3'- -GGGGGUUC---CGGGGc------GGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 129530 0.67 0.476908
Target:  5'- uUCUCCGGGGCgCgGCCCuGCUGcuGCCg -3'
miRNA:   3'- -GGGGGUUCCGgGgCGGG-CGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 146986 0.67 0.476908
Target:  5'- gCCUCCGAGGgUCCGCCUcuuGCCucGGGg- -3'
miRNA:   3'- -GGGGGUUCCgGGGCGGG---CGGu-UCCgg -5'
5221 5' -65.2 NC_001798.1 + 5413 0.67 0.476908
Target:  5'- gCCgCCGccGCUCCGCCCGCgc-GGCa -3'
miRNA:   3'- -GGgGGUucCGGGGCGGGCGguuCCGg -5'
5221 5' -65.2 NC_001798.1 + 12290 0.67 0.476908
Target:  5'- -aCCCAcAGGCCCaggaUCGCCA-GGCCc -3'
miRNA:   3'- ggGGGU-UCCGGGgcg-GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 76880 0.67 0.476908
Target:  5'- aCCCUgcGGgccuCCCUGCCCGCgGGguggaccgaccuGGCCg -3'
miRNA:   3'- gGGGGuuCC----GGGGCGGGCGgUU------------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 86902 0.67 0.476908
Target:  5'- aCCCCGgcguggagcgccGGGCCUCccgcaagaGCCUGCCGucgcacgcgcgcAGGCUg -3'
miRNA:   3'- gGGGGU------------UCCGGGG--------CGGGCGGU------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 89103 0.67 0.476908
Target:  5'- cCCCCCAccucgaucuccAGGuaguCCCgGUCCGCCuccAGGUg -3'
miRNA:   3'- -GGGGGU-----------UCC----GGGgCGGGCGGu--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 142108 0.67 0.476908
Target:  5'- aCCCCAGGGCgUCGCUaacgaGCgCGcuGCCg -3'
miRNA:   3'- gGGGGUUCCGgGGCGGg----CG-GUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 31918 0.67 0.476908
Target:  5'- gCCCCGcGGCCUCGuCCuCGCCucuuccuccGCCg -3'
miRNA:   3'- gGGGGUuCCGGGGC-GG-GCGGuuc------CGG- -5'
5221 5' -65.2 NC_001798.1 + 129484 0.67 0.476908
Target:  5'- gCCgCCu-GGCCUucgacgauaCGCUCGCCAaguuauGGGCCu -3'
miRNA:   3'- -GGgGGuuCCGGG---------GCGGGCGGU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147172 0.67 0.476908
Target:  5'- gCCgCCCGgcgccgggcggaAGGCguccCCCGCCCggcgguccgGCCcGGGCCc -3'
miRNA:   3'- -GG-GGGU------------UCCG----GGGCGGG---------CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 70158 0.67 0.476027
Target:  5'- aCCCCCAaacggaccguugcAGGUCCUguuggggaGCCUGaCCAAccuccgccGGCCg -3'
miRNA:   3'- -GGGGGU-------------UCCGGGG--------CGGGC-GGUU--------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 93085 0.67 0.476027
Target:  5'- gCCCCAgcgGGGCgCgCGCgaCGCCGggaacaaGGGCCc -3'
miRNA:   3'- gGGGGU---UCCGgG-GCGg-GCGGU-------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 52844 0.67 0.471633
Target:  5'- uCCCCCcc-GCCCC-CCUgaauagcgaguccguGCUggGGCCg -3'
miRNA:   3'- -GGGGGuucCGGGGcGGG---------------CGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 39840 0.67 0.468133
Target:  5'- cUCCCCGccGCgCUGCCgGgCGAGGCg -3'
miRNA:   3'- -GGGGGUucCGgGGCGGgCgGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 34553 0.67 0.468133
Target:  5'- cCCCCCGgagccuGGGUCCC-CCgGCgGAcGGCUc -3'
miRNA:   3'- -GGGGGU------UCCGGGGcGGgCGgUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 79437 0.67 0.468133
Target:  5'- gCCCUCGAcGCCCgCGCCCG----GGCCu -3'
miRNA:   3'- -GGGGGUUcCGGG-GCGGGCgguuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 35464 0.67 0.468133
Target:  5'- -gCCCGucugcuGGCCCgCgGCCCGUCugcuGGCCc -3'
miRNA:   3'- ggGGGUu-----CCGGG-G-CGGGCGGuu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 26183 0.67 0.464647
Target:  5'- gCUCCCGgcgcuggacggccGGGCCgCCGCCucgggcgcgggcgaCGCCAuGGCg -3'
miRNA:   3'- -GGGGGU-------------UCCGG-GGCGG--------------GCGGUuCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.