miRNA display CGI


Results 41 - 60 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 5603 0.7 0.323105
Target:  5'- gCCCCGuugguccgcgggcGGCUCCGCCCcaaagggGgCGGGGCCg -3'
miRNA:   3'- gGGGGUu------------CCGGGGCGGG-------CgGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 5738 0.72 0.224371
Target:  5'- -gCCCGGGGCCCgcgucaucccgCGCuCCGCCccaaagggggcGGGGCCg -3'
miRNA:   3'- ggGGGUUCCGGG-----------GCG-GGCGG-----------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 5876 0.7 0.305613
Target:  5'- -gCCCGGGGCCCgCGUcaucccgcgggcuCCGCCccGAGGCg -3'
miRNA:   3'- ggGGGUUCCGGG-GCG-------------GGCGG--UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 7323 0.69 0.34062
Target:  5'- gUCCCCAGGgaGCCCCGgguUCC-CCGAGaGCCc -3'
miRNA:   3'- -GGGGGUUC--CGGGGC---GGGcGGUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 7388 0.71 0.262739
Target:  5'- -aCCCAGGGUCCCGCgCauacCCAGGGaCCc -3'
miRNA:   3'- ggGGGUUCCGGGGCGgGc---GGUUCC-GG- -5'
5221 5' -65.2 NC_001798.1 + 7457 0.67 0.442324
Target:  5'- aCCCCCAcGGGaaCCCCGCgcaacCCGC--GGGCUu -3'
miRNA:   3'- -GGGGGU-UCC--GGGGCG-----GGCGguUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 7784 0.67 0.450839
Target:  5'- -aCCCAccGcCCCCGCUggcgggaGCCAGGGUCg -3'
miRNA:   3'- ggGGGUucC-GGGGCGGg------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 9021 0.66 0.531128
Target:  5'- gCCCCGAGacCCaCCGCCCcCCGcaGCCa -3'
miRNA:   3'- gGGGGUUCc-GG-GGCGGGcGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 9531 0.77 0.102112
Target:  5'- gCCCgucgCCGAGGCCcggcuuuuaaCCGCCCGCCAGGagcGCCu -3'
miRNA:   3'- -GGG----GGUUCCGG----------GGCGGGCGGUUC---CGG- -5'
5221 5' -65.2 NC_001798.1 + 9646 0.7 0.319684
Target:  5'- gCCCCGAGGCgcagcgggCCGCgCGCgGAGGgCg -3'
miRNA:   3'- gGGGGUUCCGg-------GGCGgGCGgUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 10497 0.68 0.412444
Target:  5'- gUCUCCAGGGCCCCGUagaUGaCCAGacucucguugaccacGGCUa -3'
miRNA:   3'- -GGGGGUUCCGGGGCGg--GC-GGUU---------------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 11040 0.77 0.099626
Target:  5'- uCCCCCcGGGCCCCGCCCauccauuacccGCCucccauGCCa -3'
miRNA:   3'- -GGGGGuUCCGGGGCGGG-----------CGGuuc---CGG- -5'
5221 5' -65.2 NC_001798.1 + 11435 0.71 0.268637
Target:  5'- gCCCCCGGGGUuguaaaUCUGgCCGCgGGGGCg -3'
miRNA:   3'- -GGGGGUUCCG------GGGCgGGCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 12290 0.67 0.476908
Target:  5'- -aCCCAcAGGCCCaggaUCGCCA-GGCCc -3'
miRNA:   3'- ggGGGU-UCCGGGgcg-GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 12662 0.71 0.285092
Target:  5'- aCCgCCAGGGUaCUGCCgGCCAgcgcgccgaugaucAGGCCc -3'
miRNA:   3'- -GGgGGUUCCGgGGCGGgCGGU--------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 13661 0.66 0.498289
Target:  5'- gUCCCAccgcgacaacuagcaGGGCCgCCGUCCcgacGCCGgAGGUCa -3'
miRNA:   3'- gGGGGU---------------UCCGG-GGCGGG----CGGU-UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 14815 0.72 0.245678
Target:  5'- gCCCCGcccGGCCgCGCCaaaguugugcUGCCAAGGCg -3'
miRNA:   3'- gGGGGUu--CCGGgGCGG----------GCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 15808 0.67 0.459443
Target:  5'- gUCCUCGgucaaggccaugAGGCgCCGCCCGgUucggGGGGCCc -3'
miRNA:   3'- -GGGGGU------------UCCGgGGCGGGCgG----UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 15866 0.69 0.34062
Target:  5'- aCCCCCucGGGgUCUGUCCGC-AGGGCg -3'
miRNA:   3'- -GGGGGu-UCCgGGGCGGGCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 18280 0.66 0.494695
Target:  5'- uCCUCCGcggggguauaaaAGGUgCUCGCCgggaagGCCGGGGCCg -3'
miRNA:   3'- -GGGGGU------------UCCG-GGGCGGg-----CGGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.