miRNA display CGI


Results 61 - 80 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 18602 0.71 0.251261
Target:  5'- cCCCCCGGGuccgcGCgCCGuCCCGCCGugcauAGGUCc -3'
miRNA:   3'- -GGGGGUUC-----CGgGGC-GGGCGGU-----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 19479 0.75 0.136514
Target:  5'- aCCCCCAgaaccccGGGcCCCCGCUgGCCGuuGGCg -3'
miRNA:   3'- -GGGGGU-------UCC-GGGGCGGgCGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 19982 0.66 0.516428
Target:  5'- gCCCCGccggacgcggauuccGGGuucuCCCgGCCgGCCGgggaGGGCCc -3'
miRNA:   3'- gGGGGU---------------UCC----GGGgCGGgCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 20436 0.7 0.326554
Target:  5'- gCgUCCAGgcGGCUCCGCuCCGCaucuGGGCCu -3'
miRNA:   3'- -GgGGGUU--CCGGGGCG-GGCGgu--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 20758 0.73 0.19401
Target:  5'- cCCCCCGAGcuCCCgcggggagcgacggCGCCCGCCGcguAGGUCu -3'
miRNA:   3'- -GGGGGUUCc-GGG--------------GCGGGCGGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21074 0.68 0.393231
Target:  5'- --aUCGGGGCCCCGUCC-CCccGGCCc -3'
miRNA:   3'- gggGGUUCCGGGGCGGGcGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21108 0.66 0.531128
Target:  5'- cCCCCCGGcccGUCCC-CCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGUUc--CGGGGcGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21150 0.66 0.531128
Target:  5'- cCCCCCGGcccGUCCC-CCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGUUc--CGGGGcGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21296 0.68 0.425571
Target:  5'- cCCCCCGuccCCCCGUCC-CCccGGCCc -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGcGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21335 0.74 0.165727
Target:  5'- gCCCCCc-GGCCCCccgGCCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGuuCCGGGG---CGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21369 0.66 0.494695
Target:  5'- uCCCCCc-GGCCCguccccccgGCCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGuuCCGGGg--------CGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21408 0.66 0.494695
Target:  5'- uCCCCCc-GGCCCguccccccgGCCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGuuCCGGGg--------CGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21461 0.76 0.118296
Target:  5'- cCCCCCGuc-CCCCGCCCGUCcccccGGCCg -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21491 0.69 0.377671
Target:  5'- gCCCCCcGGGUCaCCGuaCCUGCgaUAAGGCUg -3'
miRNA:   3'- -GGGGGuUCCGG-GGC--GGGCG--GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21632 0.67 0.485763
Target:  5'- -aUCCGGGugcgucgguGCCCCGCUCGCCGccGGCg -3'
miRNA:   3'- ggGGGUUC---------CGGGGCGGGCGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 21795 0.72 0.227465
Target:  5'- cCCCCCGuccGGGCCCgccucggggcggaGCCCGCgGgaugacgcGGGCCc -3'
miRNA:   3'- -GGGGGU---UCCGGGg------------CGGGCGgU--------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 21934 0.77 0.099626
Target:  5'- aCCCUgcGGCCCCGCCC-CCuuuGGGCg -3'
miRNA:   3'- gGGGGuuCCGGGGCGGGcGGu--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 22071 0.76 0.130382
Target:  5'- aCCCUgcGGCCCCGCCC-CCuuugGGGCg -3'
miRNA:   3'- gGGGGuuCCGGGGCGGGcGGu---UCCGg -5'
5221 5' -65.2 NC_001798.1 + 22124 0.71 0.280751
Target:  5'- aCCUCGccGGCCCCuuugggGCCgGCgGGGGCCa -3'
miRNA:   3'- gGGGGUu-CCGGGG------CGGgCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 22192 0.67 0.450839
Target:  5'- aCCCggaAGGGCaggggagcgagCCCGCCCGCgAcgaGGGUCu -3'
miRNA:   3'- gGGGg--UUCCG-----------GGGCGGGCGgU---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.