miRNA display CGI


Results 81 - 100 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 22455 0.71 0.251261
Target:  5'- uCCCCCc--GCCCCGCgCGCCccGAGGaCUa -3'
miRNA:   3'- -GGGGGuucCGGGGCGgGCGG--UUCC-GG- -5'
5221 5' -65.2 NC_001798.1 + 22852 0.67 0.485763
Target:  5'- aCCCCGAacccGGaCCgUCGcCCCGCCGcgcGGCCc -3'
miRNA:   3'- gGGGGUU----CC-GG-GGC-GGGCGGUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 23021 0.67 0.450839
Target:  5'- gCCgCGGcagcuGGCCCUGCUgGCCucgaugguggacGAGGCCg -3'
miRNA:   3'- gGGgGUU-----CCGGGGCGGgCGG------------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23341 0.66 0.521922
Target:  5'- gCCgCCGGcGCgCCC-CCCGCCGGcgcucGGCCg -3'
miRNA:   3'- -GGgGGUUcCG-GGGcGGGCGGUU-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 23564 0.67 0.442324
Target:  5'- gCCCgCgAGGGCCCCGggggcggCGCCccGGCCg -3'
miRNA:   3'- -GGG-GgUUCCGGGGCgg-----GCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23600 0.82 0.049404
Target:  5'- cCCgCCCAGGGCCgaGCCCGCCccGGCCc -3'
miRNA:   3'- -GG-GGGUUCCGGggCGGGCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23631 0.72 0.229546
Target:  5'- aCCCCCGcggcgaccgcGGGCCgCCuggaGCgCCGCCG-GGCCc -3'
miRNA:   3'- -GGGGGU----------UCCGG-GG----CG-GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23810 0.74 0.1697
Target:  5'- -gCCCGGGGCCggccccCCGCCC-CCGGGGCg -3'
miRNA:   3'- ggGGGUUCCGG------GGCGGGcGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 23922 0.73 0.214319
Target:  5'- gCCUCGGGcGCCCCggcGCCCGUguGGGCg -3'
miRNA:   3'- gGGGGUUC-CGGGG---CGGGCGguUCCGg -5'
5221 5' -65.2 NC_001798.1 + 24385 0.66 0.540392
Target:  5'- gCCCgCCGccGCCgCCGCCCcguuGCCGucGGCg -3'
miRNA:   3'- -GGG-GGUucCGG-GGCGGG----CGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 24482 0.76 0.129438
Target:  5'- gCCCUggGGCgccugagcgccgcgCCCGCCUccgcgccgGCCGGGGCCg -3'
miRNA:   3'- gGGGGuuCCG--------------GGGCGGG--------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 24706 0.69 0.333532
Target:  5'- gCCCCCGc-GCCCgggGCCCGCgGGcgcGGCCg -3'
miRNA:   3'- -GGGGGUucCGGGg--CGGGCGgUU---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 24747 0.68 0.425571
Target:  5'- aCgCCGAcGcGCCCCGCCUGCgCGccuGGCUg -3'
miRNA:   3'- gGgGGUU-C-CGGGGCGGGCG-GUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 24890 0.7 0.299729
Target:  5'- gUCgCCGGGGCCCUggGCCCGgCGcuGCCg -3'
miRNA:   3'- -GGgGGUUCCGGGG--CGGGCgGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 24989 0.69 0.333532
Target:  5'- gCCCCCugcuGGCCgacaCCG-UCGCCGcGGCCg -3'
miRNA:   3'- -GGGGGuu--CCGG----GGCgGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25065 0.77 0.112652
Target:  5'- -gCgCAAGaGCCCCGCCCcgGCCAGGGCg -3'
miRNA:   3'- ggGgGUUC-CGGGGCGGG--CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 25139 0.77 0.109925
Target:  5'- cCCCCCGccccgcGGccGCCCCuCCCGCgGGGGCCg -3'
miRNA:   3'- -GGGGGU------UC--CGGGGcGGGCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25176 0.76 0.124203
Target:  5'- gCCCCCc--GCCCCGCcgacgccgCCGCCGcGGCCg -3'
miRNA:   3'- -GGGGGuucCGGGGCG--------GGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25236 0.78 0.094824
Target:  5'- gCCCgCCgAGGGCCCCGaCCCGC-AGGGCg -3'
miRNA:   3'- -GGG-GG-UUCCGGGGC-GGGCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 25278 0.71 0.262155
Target:  5'- gCCgCCGGGGCCCaGCCacaCGCCGGcgcccucGGCCg -3'
miRNA:   3'- -GGgGGUUCCGGGgCGG---GCGGUU-------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.