miRNA display CGI


Results 101 - 120 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 25318 0.74 0.182136
Target:  5'- gCCCUgGAGGCCUacugCGCCCcgcggGCCGuGGCCg -3'
miRNA:   3'- -GGGGgUUCCGGG----GCGGG-----CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25453 0.73 0.195371
Target:  5'- cCCCCCGGcGGCg-CGCCCGCCGccuucGGCCc -3'
miRNA:   3'- -GGGGGUU-CCGggGCGGGCGGUu----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 25492 0.66 0.521922
Target:  5'- gCCUC-GGGCCCgcugCGCCgCGCgGcGGCCu -3'
miRNA:   3'- gGGGGuUCCGGG----GCGG-GCGgUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25607 0.66 0.531128
Target:  5'- gCgCCGggggcGGGCCCCccccggagugGUCCGCCGAGcGCg -3'
miRNA:   3'- gGgGGU-----UCCGGGG----------CGGGCGGUUC-CGg -5'
5221 5' -65.2 NC_001798.1 + 25672 0.71 0.268637
Target:  5'- gCCCUGGgcaaccGGCUCUgcggGCCCGCCAcGGCCg -3'
miRNA:   3'- gGGGGUU------CCGGGG----CGGGCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25871 0.66 0.494695
Target:  5'- gCgCCGcGGaCUgGCCCGCCGacGGGCCc -3'
miRNA:   3'- gGgGGUuCCgGGgCGGGCGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 25927 0.72 0.245678
Target:  5'- gCCUgCGAGGUgCUGCCCGCCGGcaguGcGCCg -3'
miRNA:   3'- -GGGgGUUCCGgGGCGGGCGGUU----C-CGG- -5'
5221 5' -65.2 NC_001798.1 + 26065 0.7 0.299729
Target:  5'- aCCCCGAcGCgCCGCCgcugcgccucUGCCGcgGGGCCa -3'
miRNA:   3'- gGGGGUUcCGgGGCGG----------GCGGU--UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 26183 0.67 0.464647
Target:  5'- gCUCCCGgcgcuggacggccGGGCCgCCGCCucgggcgcgggcgaCGCCAuGGCg -3'
miRNA:   3'- -GGGGGU-------------UCCGG-GGCGG--------------GCGGUuCCGg -5'
5221 5' -65.2 NC_001798.1 + 26291 0.66 0.512779
Target:  5'- gCgCUggGGCCUgggCGCgCCGCUgcGGCCc -3'
miRNA:   3'- gGgGGuuCCGGG---GCG-GGCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 26468 0.69 0.347815
Target:  5'- gCCCCCGcagauacgcuGGGCgUCGgCCGC--GGGCCg -3'
miRNA:   3'- -GGGGGU----------UCCGgGGCgGGCGguUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 26556 0.67 0.442324
Target:  5'- gCCgCGGGGCUggCCaCgCCGCCGAGGCg -3'
miRNA:   3'- gGGgGUUCCGG--GGcG-GGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 27472 0.66 0.531128
Target:  5'- gUCCCC---GUCCUGCCgCGCgGGGGCg -3'
miRNA:   3'- -GGGGGuucCGGGGCGG-GCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 27634 0.72 0.240199
Target:  5'- cCCgCCCGccGCCgCCGCCCGCCuucGcGCCc -3'
miRNA:   3'- -GG-GGGUucCGG-GGCGGGCGGuu-C-CGG- -5'
5221 5' -65.2 NC_001798.1 + 27743 0.69 0.370047
Target:  5'- gCCCCUuaaGAGGgCCCGCaacaCgGCCcGGGCUg -3'
miRNA:   3'- -GGGGG---UUCCgGGGCG----GgCGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 27861 0.67 0.47779
Target:  5'- gCCCCGacgcgcuccggcuccGGGCCuacgccgagcccagCCGCCCGCCAuGuCCc -3'
miRNA:   3'- gGGGGU---------------UCCGG--------------GGCGGGCGGUuCcGG- -5'
5221 5' -65.2 NC_001798.1 + 27917 0.78 0.083761
Target:  5'- gCCgCCGGGGuCCCCG-CCGCCGGGGUCc -3'
miRNA:   3'- -GGgGGUUCC-GGGGCgGGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28209 0.72 0.245678
Target:  5'- gCgCCgGAGGCCCCGCaCGCCGc-GCCu -3'
miRNA:   3'- -GgGGgUUCCGGGGCGgGCGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 28246 0.68 0.417338
Target:  5'- gCCCCCc--GCCgCCGCCgCGCaaggagcgcGGGCCg -3'
miRNA:   3'- -GGGGGuucCGG-GGCGG-GCGgu-------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28365 0.76 0.124203
Target:  5'- cCCCCCGcGuCCCCGCCCGCgGAcGcGCCg -3'
miRNA:   3'- -GGGGGUuCcGGGGCGGGCGgUU-C-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.