miRNA display CGI


Results 121 - 140 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 28534 0.71 0.27464
Target:  5'- aCCCCCGugucuCCCCGCCCGC--AGGUg -3'
miRNA:   3'- -GGGGGUucc--GGGGCGGGCGguUCCGg -5'
5221 5' -65.2 NC_001798.1 + 28716 0.72 0.242378
Target:  5'- -gCCCGAGGCCCgagcucgggcccgaGCCCgaGCCcGGGCCc -3'
miRNA:   3'- ggGGGUUCCGGGg-------------CGGG--CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28810 0.67 0.484874
Target:  5'- uCCUCCGccgccgcGGGCCCgGgCCGUC-GGGCg -3'
miRNA:   3'- -GGGGGU-------UCCGGGgCgGGCGGuUCCGg -5'
5221 5' -65.2 NC_001798.1 + 28883 0.7 0.319684
Target:  5'- gCCCCGGaGCUCCgaagGUCUGCgCGAGGCCg -3'
miRNA:   3'- gGGGGUUcCGGGG----CGGGCG-GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28915 0.68 0.408394
Target:  5'- cUCUCCGaagagacgaugGGaGCCCCGCuauauauCCGCgAGGGCCc -3'
miRNA:   3'- -GGGGGU-----------UC-CGGGGCG-------GGCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 28968 0.78 0.085871
Target:  5'- gCCCCGccGCUCCGCCCGCCccagGGGGCg -3'
miRNA:   3'- gGGGGUucCGGGGCGGGCGG----UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 29391 0.74 0.161837
Target:  5'- aCCaCUCAGGGCCgCGCCgGCgGGGcGCCg -3'
miRNA:   3'- -GG-GGGUUCCGGgGCGGgCGgUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 29507 0.7 0.30892
Target:  5'- gCCCCGAGaGggggggauucccuccCUCCGCCCccGCCGGGGCg -3'
miRNA:   3'- gGGGGUUC-C---------------GGGGCGGG--CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 29805 0.71 0.251261
Target:  5'- aCCCC--GGCCCCGagcggCCGCCGcGGCa -3'
miRNA:   3'- gGGGGuuCCGGGGCg----GGCGGUuCCGg -5'
5221 5' -65.2 NC_001798.1 + 29986 0.72 0.231645
Target:  5'- aCCCCCGuGGGCCgUGCgCCGCCccccgacccucugggGGGGCg -3'
miRNA:   3'- -GGGGGU-UCCGGgGCG-GGCGG---------------UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 30431 0.79 0.077726
Target:  5'- gCCCCC--GGCCCgGCCCccgGCCGAGcGCCa -3'
miRNA:   3'- -GGGGGuuCCGGGgCGGG---CGGUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 30748 0.69 0.36253
Target:  5'- aCCCCCGgacccgcguggAGGCCgaGgCgGCCGugcGGGCCg -3'
miRNA:   3'- -GGGGGU-----------UCCGGggCgGgCGGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 30884 0.66 0.494695
Target:  5'- cCCCCCGuGGCCCgGCacggaCGaCGAGGaCg -3'
miRNA:   3'- -GGGGGUuCCGGGgCGg----GCgGUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 31129 0.68 0.401166
Target:  5'- cCCCCCGaagAGcGCCCCGgC-GCgGGGGCg -3'
miRNA:   3'- -GGGGGU---UC-CGGGGCgGgCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 31405 0.71 0.27464
Target:  5'- cCCCCgCGAGacaGCCCCGCgCGgcCCAGGaGCCc -3'
miRNA:   3'- -GGGG-GUUC---CGGGGCGgGC--GGUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 31460 0.73 0.190868
Target:  5'- uCCCCCGccGUCuCCGCgCCGCCccgcGGGCCc -3'
miRNA:   3'- -GGGGGUucCGG-GGCG-GGCGGu---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 31611 0.71 0.286969
Target:  5'- gUCCgGAGuccGCCCCGCgCCGCCGccGCCc -3'
miRNA:   3'- gGGGgUUC---CGGGGCG-GGCGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 31858 0.69 0.34062
Target:  5'- cCCCCCAcgccgcggaggGGGCggcggCCCGCCC-CCGgaagAGGCg -3'
miRNA:   3'- -GGGGGU-----------UCCG-----GGGCGGGcGGU----UCCGg -5'
5221 5' -65.2 NC_001798.1 + 31918 0.67 0.476908
Target:  5'- gCCCCGcGGCCUCGuCCuCGCCucuuccuccGCCg -3'
miRNA:   3'- gGGGGUuCCGGGGC-GG-GCGGuuc------CGG- -5'
5221 5' -65.2 NC_001798.1 + 31971 0.72 0.245678
Target:  5'- cCCCCCAggggguggGGGCCaagagggcggCGCCgCGCCG-GGCCc -3'
miRNA:   3'- -GGGGGU--------UCCGGg---------GCGG-GCGGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.