miRNA display CGI


Results 21 - 40 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 150776 0.72 0.234822
Target:  5'- gCCCCCAgacccAGaucccacCCCCGCCCGCaaCGGGGCg -3'
miRNA:   3'- -GGGGGU-----UCc------GGGGCGGGCG--GUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 150262 0.68 0.401166
Target:  5'- cCUCCCGAcccgcgcgcgucGGUCgCGCCUGCCc-GGCCc -3'
miRNA:   3'- -GGGGGUU------------CCGGgGCGGGCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 150042 0.68 0.409202
Target:  5'- -gUCCGGGGCCCgGCgcggcgCCGCCcucuuGGCCc -3'
miRNA:   3'- ggGGGUUCCGGGgCG------GGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 149972 0.66 0.521922
Target:  5'- aCgCCGAcgggggcgcGGCgCCCGCggaCGCCGGGGCg -3'
miRNA:   3'- gGgGGUU---------CCG-GGGCGg--GCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 149805 0.77 0.109925
Target:  5'- gCUCCCAccaGCCCCGCCCGCagaggaaGAGGCg -3'
miRNA:   3'- -GGGGGUuc-CGGGGCGGGCGg------UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 149732 0.69 0.370047
Target:  5'- gCCCCCGcGGCgCaGCagCGCgGGGGCCg -3'
miRNA:   3'- -GGGGGUuCCGgGgCGg-GCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 149579 0.66 0.503702
Target:  5'- uCCCCCGugaccGUCuuGUUcacguaaggCGCCAGGGCCa -3'
miRNA:   3'- -GGGGGUuc---CGGggCGG---------GCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 149467 0.67 0.450839
Target:  5'- gCUCCAcgcggGGGCCgCgGCCCGCagcAGGUCc -3'
miRNA:   3'- gGGGGU-----UCCGG-GgCGGGCGgu-UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 149225 0.7 0.293295
Target:  5'- uCCCCCuacuCCCCgugGCCCGCgGGGGCg -3'
miRNA:   3'- -GGGGGuuccGGGG---CGGGCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 149139 0.73 0.190868
Target:  5'- cCCCCCAccuccCCCUGCCC-CCGAGGCg -3'
miRNA:   3'- -GGGGGUucc--GGGGCGGGcGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 148897 0.73 0.192658
Target:  5'- cCCCCCAuccccGGCCCC-CCUGCgCGggggagcugcaucaaAGGCCa -3'
miRNA:   3'- -GGGGGUu----CCGGGGcGGGCG-GU---------------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 148674 0.76 0.133577
Target:  5'- aCCCCCAGGGUCUgGCCgGCCAGacGuGCUg -3'
miRNA:   3'- -GGGGGUUCCGGGgCGGgCGGUU--C-CGG- -5'
5221 5' -65.2 NC_001798.1 + 148242 0.69 0.370047
Target:  5'- gCCCCGauGGGagucuCCCCGCa-GCCAGGGUa -3'
miRNA:   3'- gGGGGU--UCC-----GGGGCGggCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 147978 0.69 0.347815
Target:  5'- aCCCCaAAGGCgCgUGCCCGgCCAcaGCCg -3'
miRNA:   3'- gGGGG-UUCCG-GgGCGGGC-GGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 147453 0.67 0.4339
Target:  5'- uCCCaCCGAGacGCCgcgccgcgugagCCGUCCGCCGGGGgacCCa -3'
miRNA:   3'- -GGG-GGUUC--CGG------------GGCGGGCGGUUCC---GG- -5'
5221 5' -65.2 NC_001798.1 + 147415 0.69 0.36253
Target:  5'- cCCCCCc---CCCCcCCCGCCGccGCCg -3'
miRNA:   3'- -GGGGGuuccGGGGcGGGCGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 147294 0.73 0.209439
Target:  5'- cCUCCCGGGccGCCCCGCUC-CCG-GGCCc -3'
miRNA:   3'- -GGGGGUUC--CGGGGCGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147242 0.81 0.056069
Target:  5'- gCCCCGGGGCCCCggGCCgCGCCGGcGGCg -3'
miRNA:   3'- gGGGGUUCCGGGG--CGG-GCGGUU-CCGg -5'
5221 5' -65.2 NC_001798.1 + 147172 0.67 0.476908
Target:  5'- gCCgCCCGgcgccgggcggaAGGCguccCCCGCCCggcgguccgGCCcGGGCCc -3'
miRNA:   3'- -GG-GGGU------------UCCG----GGGCGGG---------CGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147087 0.66 0.512779
Target:  5'- gCCCCCuccGGCgCCGCgCGUUcgcgaAAGGCg -3'
miRNA:   3'- -GGGGGuu-CCGgGGCGgGCGG-----UUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.