miRNA display CGI


Results 41 - 60 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 147052 0.66 0.511868
Target:  5'- gCCCCGgccggagGGGcCCCCGCaCC-UCGGcGGCCg -3'
miRNA:   3'- gGGGGU-------UCC-GGGGCG-GGcGGUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 147016 0.73 0.209439
Target:  5'- aCCCCCGggcGGGCCggggcUUGgCCGCCGAGGUg -3'
miRNA:   3'- -GGGGGU---UCCGG-----GGCgGGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 146986 0.67 0.476908
Target:  5'- gCCUCCGAGGgUCCGCCUcuuGCCucGGGg- -3'
miRNA:   3'- -GGGGGUUCCgGGGCGGG---CGGu-UCCgg -5'
5221 5' -65.2 NC_001798.1 + 146765 0.7 0.306272
Target:  5'- -gCCCGA-GCCCCGCCCGCguguugcuguGGGCa -3'
miRNA:   3'- ggGGGUUcCGGGGCGGGCGgu--------UCCGg -5'
5221 5' -65.2 NC_001798.1 + 146604 0.7 0.326554
Target:  5'- gCgCCAGcGGCCCaCGCcucCCGCCGcauuAGGCCc -3'
miRNA:   3'- gGgGGUU-CCGGG-GCG---GGCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 146445 0.67 0.442324
Target:  5'- gCCCCCGGaGCCCgCGgCCgcaGCCGAGcagcGCCg -3'
miRNA:   3'- -GGGGGUUcCGGG-GCgGG---CGGUUC----CGG- -5'
5221 5' -65.2 NC_001798.1 + 146246 0.66 0.503702
Target:  5'- cCCCCCGccgcccgacgaAGGagaCCCaaGCaCCGCagccggaGAGGCCg -3'
miRNA:   3'- -GGGGGU-----------UCCg--GGG--CG-GGCGg------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 145886 0.66 0.540392
Target:  5'- cCCCCCA---CCCCGaCCGCCGccGCg -3'
miRNA:   3'- -GGGGGUuccGGGGCgGGCGGUucCGg -5'
5221 5' -65.2 NC_001798.1 + 145724 0.69 0.34062
Target:  5'- gCCCC--GGCCCCgGCCCGCgCcccGCCg -3'
miRNA:   3'- gGGGGuuCCGGGG-CGGGCG-GuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 145627 0.83 0.0393
Target:  5'- gCCCCAccGCCCCGCCCGgCAgggGGGCCc -3'
miRNA:   3'- gGGGGUucCGGGGCGGGCgGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 145539 0.67 0.485763
Target:  5'- gCCCCCGcccGGccGCCCgCGUCgCGCCGGcGCCc -3'
miRNA:   3'- -GGGGGU---UC--CGGG-GCGG-GCGGUUcCGG- -5'
5221 5' -65.2 NC_001798.1 + 145497 0.74 0.165727
Target:  5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3'
miRNA:   3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 145455 0.74 0.165727
Target:  5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3'
miRNA:   3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 145413 0.74 0.165727
Target:  5'- gCCCCCGcccGGCCgCCGCgCGCCcccgcccGGCCg -3'
miRNA:   3'- -GGGGGUu--CCGG-GGCGgGCGGuu-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 143793 0.67 0.484874
Target:  5'- gCCCCAgagcauaaagaccAGGCCCgGgCgGCgCGcGGCCa -3'
miRNA:   3'- gGGGGU-------------UCCGGGgCgGgCG-GUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 142685 0.66 0.512779
Target:  5'- cUCCCCA---CCCCGCCCGCUu--GCa -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGCGGuucCGg -5'
5221 5' -65.2 NC_001798.1 + 142108 0.67 0.476908
Target:  5'- aCCCCAGGGCgUCGCUaacgaGCgCGcuGCCg -3'
miRNA:   3'- gGGGGUUCCGgGGCGGg----CG-GUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 141787 0.66 0.531128
Target:  5'- gCUCCCAGGGgCUCaGUCUGgaCAAGGUCg -3'
miRNA:   3'- -GGGGGUUCCgGGG-CGGGCg-GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 139581 0.67 0.4339
Target:  5'- gCCUUgGAGGUCCCGaCCgGCCu--GCCg -3'
miRNA:   3'- -GGGGgUUCCGGGGC-GGgCGGuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 139409 0.67 0.445719
Target:  5'- gCCCCCAcagcagcccgGGGCCa-GaCCCGCCGugcgguucagggacgAGGCg -3'
miRNA:   3'- -GGGGGU----------UCCGGggC-GGGCGGU---------------UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.