miRNA display CGI


Results 61 - 80 of 495 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 138742 0.68 0.393231
Target:  5'- gCUCCGcGGCCCCgGCgaccguggccagCUGCCGGGGCa -3'
miRNA:   3'- gGGGGUuCCGGGG-CG------------GGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 138160 0.66 0.521922
Target:  5'- gCCCCC-GGGUCCUGggggcgcgaCCCGC---GGCCg -3'
miRNA:   3'- -GGGGGuUCCGGGGC---------GGGCGguuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 137937 0.7 0.306272
Target:  5'- uCCCCCGgccGCCCgGUCCGCCGcGcGCUg -3'
miRNA:   3'- -GGGGGUuc-CGGGgCGGGCGGUuC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 135928 0.67 0.4339
Target:  5'- gCCCCAAacGGCCU--UCCGCgGAGGCg -3'
miRNA:   3'- gGGGGUU--CCGGGgcGGGCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 135765 0.77 0.112652
Target:  5'- uCCUCCGGcggccGGCCgCCgGCCCGCCGgaggAGGCCg -3'
miRNA:   3'- -GGGGGUU-----CCGG-GG-CGGGCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 135707 0.7 0.326554
Target:  5'- uCUCCgCGGGGCCgcguaCGCCCggcgGCCGAGGUUa -3'
miRNA:   3'- -GGGG-GUUCCGGg----GCGGG----CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 135540 0.69 0.36253
Target:  5'- gCCCUCGAGGCgUCCGUgCgCGCCGuacuuucGGCCa -3'
miRNA:   3'- -GGGGGUUCCG-GGGCG-G-GCGGUu------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 135294 0.66 0.503702
Target:  5'- gCCCCCucGGaGCCCUGg--GCCcGGGCCg -3'
miRNA:   3'- -GGGGGu-UC-CGGGGCgggCGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 135188 0.66 0.534827
Target:  5'- gCUCCAGGcccaGCuCCUGgCCGCCcucgcgggccucgggGAGGCCg -3'
miRNA:   3'- gGGGGUUC----CG-GGGCgGGCGG---------------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 135023 0.71 0.256948
Target:  5'- gCCCCCGcGGGCaUgGCCgGCCGuGGCCu -3'
miRNA:   3'- -GGGGGU-UCCGgGgCGGgCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134983 0.74 0.165727
Target:  5'- gCCUgGGGGCCUgGCCCgcggugggcGCCAGGGUCg -3'
miRNA:   3'- gGGGgUUCCGGGgCGGG---------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134799 0.7 0.312924
Target:  5'- gCCCCCGGaGCCCUGgccCCCGUCuucgcuuuucuGGGGCCc -3'
miRNA:   3'- -GGGGGUUcCGGGGC---GGGCGG-----------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134510 0.68 0.413257
Target:  5'- gCCCCCAGugcgcguccuccGCCUCGCUCGCCGucaccaucacgacgAGGaCCg -3'
miRNA:   3'- -GGGGGUUc-----------CGGGGCGGGCGGU--------------UCC-GG- -5'
5221 5' -65.2 NC_001798.1 + 134429 0.66 0.531128
Target:  5'- aCCCgCu-GGCCCUGUCCGCgCGcgucGCCg -3'
miRNA:   3'- -GGGgGuuCCGGGGCGGGCG-GUuc--CGG- -5'
5221 5' -65.2 NC_001798.1 + 134372 0.66 0.537607
Target:  5'- gCCCgCC--GGCCgcuccucgcgCCGCCCuccuggacguggagGCCAAGGUCg -3'
miRNA:   3'- -GGG-GGuuCCGG----------GGCGGG--------------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134296 0.68 0.385399
Target:  5'- gCCCUCuucGUCCCGCUgCGCCuGGGCUg -3'
miRNA:   3'- -GGGGGuucCGGGGCGG-GCGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134158 0.8 0.065058
Target:  5'- gCCCCCGGGGCCgucgcggCCGCCCGCgccgCGAcGGCCc -3'
miRNA:   3'- -GGGGGUUCCGG-------GGCGGGCG----GUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 133844 0.7 0.293295
Target:  5'- uCCCaCCGAGGCCUgGCCCaugauGCagGGGGCg -3'
miRNA:   3'- -GGG-GGUUCCGGGgCGGG-----CGg-UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 132947 0.7 0.293295
Target:  5'- aCCCCGAcacGuCCCUGUCgGCCcAGGCCg -3'
miRNA:   3'- gGGGGUUc--C-GGGGCGGgCGGuUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 132126 0.77 0.109925
Target:  5'- uCCUgCAGgcGGCCCUGCgCCGCCGgGGGCCg -3'
miRNA:   3'- -GGGgGUU--CCGGGGCG-GGCGGU-UCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.