miRNA display CGI


Results 81 - 100 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 131004 0.66 0.494695
Target:  5'- aUCgCCAuacGGGCCgCCGCCagGCgAcGGGCCg -3'
miRNA:   3'- -GGgGGU---UCCGG-GGCGGg-CGgU-UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 129662 0.71 0.27464
Target:  5'- cCCCCCGAcgugcgcguGGUcaCCCGggCGCCGGGGCCc -3'
miRNA:   3'- -GGGGGUU---------CCG--GGGCggGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 129530 0.67 0.476908
Target:  5'- uUCUCCGGGGCgCgGCCCuGCUGcuGCCg -3'
miRNA:   3'- -GGGGGUUCCGgGgCGGG-CGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 129484 0.67 0.476908
Target:  5'- gCCgCCu-GGCCUucgacgauaCGCUCGCCAaguuauGGGCCu -3'
miRNA:   3'- -GGgGGuuCCGGG---------GCGGGCGGU------UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 129353 0.78 0.085871
Target:  5'- gCCCgCCGggccuggcgGGGCCCCcggaCCCGCCAAGGCa -3'
miRNA:   3'- -GGG-GGU---------UCCGGGGc---GGGCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 128830 0.7 0.312924
Target:  5'- aCCCCGcGGaCCCCggcGCCC-CCGcGGCCu -3'
miRNA:   3'- gGGGGUuCC-GGGG---CGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 128749 0.69 0.36253
Target:  5'- aCCCUCAcggcuaccuGGcCCCCGCCCcCCAGaccccccuGGCCu -3'
miRNA:   3'- -GGGGGUu--------CC-GGGGCGGGcGGUU--------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 128390 0.71 0.280751
Target:  5'- aCUgCCAgcucuGGGCCCUGCuUCGgCGGGGCCu -3'
miRNA:   3'- -GGgGGU-----UCCGGGGCG-GGCgGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 128313 0.67 0.433063
Target:  5'- cCCCCCGuccgccgccgaAGccgucgccCCCCGCCCGCUuaugggauuuuacGAGGCg -3'
miRNA:   3'- -GGGGGU-----------UCc-------GGGGCGGGCGG-------------UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 128008 0.68 0.425571
Target:  5'- aCCCCCGAcauuCCCCuCUCGCCGggGGGCg -3'
miRNA:   3'- -GGGGGUUcc--GGGGcGGGCGGU--UCCGg -5'
5221 5' -65.2 NC_001798.1 + 127945 0.76 0.119165
Target:  5'- gCCCCGggcgaaaAGGCCCgGCCCGCguccccggcccucucUGAGGCCu -3'
miRNA:   3'- gGGGGU-------UCCGGGgCGGGCG---------------GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 127899 0.68 0.385399
Target:  5'- uUCCCAuuGGCCCCagaGCCCcCCAcguGGGCa -3'
miRNA:   3'- gGGGGUu-CCGGGG---CGGGcGGU---UCCGg -5'
5221 5' -65.2 NC_001798.1 + 127843 0.7 0.312924
Target:  5'- aCCgUCuuuGGGCCCCGCCCcgccccaccccGCCccacgucaccgGGGGCCc -3'
miRNA:   3'- -GGgGGu--UCCGGGGCGGG-----------CGG-----------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 127803 0.72 0.245678
Target:  5'- uCCCCCGAagcGGCCCCGaCCCaacaGCCuagaucuGGCg -3'
miRNA:   3'- -GGGGGUU---CCGGGGC-GGG----CGGuu-----CCGg -5'
5221 5' -65.2 NC_001798.1 + 127772 0.7 0.312924
Target:  5'- gCCCCGcGGaCCCCGCCCGCgAcc-CCg -3'
miRNA:   3'- gGGGGUuCC-GGGGCGGGCGgUuccGG- -5'
5221 5' -65.2 NC_001798.1 + 127124 0.74 0.173759
Target:  5'- cCCCCCGGGGguuugggaugcCCgCCGCCCuGaCCAcGGCCa -3'
miRNA:   3'- -GGGGGUUCC-----------GG-GGCGGG-C-GGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 127083 0.67 0.4339
Target:  5'- aUCCCGGGGCCaguuuUGCCU-CCAGGaGCCg -3'
miRNA:   3'- gGGGGUUCCGGg----GCGGGcGGUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 126593 0.68 0.425571
Target:  5'- aUCCCCGGGG-CCCGCa-GCUucgGGGGCUc -3'
miRNA:   3'- -GGGGGUUCCgGGGCGggCGG---UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 126416 0.84 0.034592
Target:  5'- uCCCCCGAGGCCCCcgGCCCugcggccaaGCUAAGGCg -3'
miRNA:   3'- -GGGGGUUCCGGGG--CGGG---------CGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 126294 0.7 0.312924
Target:  5'- cCCCCCGAgacGGCgCCgucuccggaGCCCGCCccGGGUCc -3'
miRNA:   3'- -GGGGGUU---CCGgGG---------CGGGCGGu-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.