miRNA display CGI


Results 101 - 120 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 126198 0.7 0.299729
Target:  5'- gCCCCCAAGGUgcacaCCgaCGCuCCuUCAAGGCCu -3'
miRNA:   3'- -GGGGGUUCCG-----GG--GCG-GGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 125746 0.67 0.4339
Target:  5'- gCCgCCAcgcGGCCCUGCgCCGaCGuuuGGCCg -3'
miRNA:   3'- -GGgGGUu--CCGGGGCG-GGCgGUu--CCGG- -5'
5221 5' -65.2 NC_001798.1 + 125540 0.69 0.370047
Target:  5'- gCCgCCGAGcGUCagGCCCGCCGAcGCCu -3'
miRNA:   3'- -GGgGGUUC-CGGggCGGGCGGUUcCGG- -5'
5221 5' -65.2 NC_001798.1 + 125290 0.69 0.333532
Target:  5'- aCCgCAGGcgcGCCaCCGCCCGCaccagcucgGGGGCCa -3'
miRNA:   3'- gGGgGUUC---CGG-GGCGGGCGg--------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 125047 0.69 0.347815
Target:  5'- gCUCCAAGGUgccguacgUCUGCCCGUgGGuGGCCa -3'
miRNA:   3'- gGGGGUUCCG--------GGGCGGGCGgUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 124428 0.67 0.450839
Target:  5'- gCCCCGcGGUCgCGCggGCCGuGGCCa -3'
miRNA:   3'- gGGGGUuCCGGgGCGggCGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 124072 0.68 0.417338
Target:  5'- cCCCCCGGgaggaggcGGCgCCUGCgCC-CCGAcGGCCc -3'
miRNA:   3'- -GGGGGUU--------CCG-GGGCG-GGcGGUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 124018 0.72 0.229546
Target:  5'- uCCCCCGGGcaGCCggGCCCGCCAuuuaggauGGCUg -3'
miRNA:   3'- -GGGGGUUC--CGGggCGGGCGGUu-------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 123815 0.68 0.401166
Target:  5'- cCCCCgGAGGaaacCCCCGacCCCGCC---GCCg -3'
miRNA:   3'- -GGGGgUUCC----GGGGC--GGGCGGuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 123759 0.66 0.53668
Target:  5'- aCCCCC--GGaCCCCGCUgcugugcacccuaGCCuucGGCCa -3'
miRNA:   3'- -GGGGGuuCC-GGGGCGGg------------CGGuu-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 123444 0.71 0.262739
Target:  5'- cCCCCCGAcGCgCgCGCCCccgacCCGGGGCCc -3'
miRNA:   3'- -GGGGGUUcCGgG-GCGGGc----GGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 123404 0.77 0.112377
Target:  5'- cCCCCCGGgagccgcGGCCCCGCCgGgucaCCGGGGCg -3'
miRNA:   3'- -GGGGGUU-------CCGGGGCGGgC----GGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 122399 0.68 0.393231
Target:  5'- uCCUCCGAgcuGGCCaCgGCCCuGaCgGAGGCCu -3'
miRNA:   3'- -GGGGGUU---CCGG-GgCGGG-C-GgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 122009 0.74 0.173759
Target:  5'- gCCUCGGGGCUCCGCCagggCGCCcuGGUCc -3'
miRNA:   3'- gGGGGUUCCGGGGCGG----GCGGuuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 121773 0.66 0.540392
Target:  5'- cUCCCCAGGcGUCCUcgGUCUcgGgCGGGGCCg -3'
miRNA:   3'- -GGGGGUUC-CGGGG--CGGG--CgGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 121112 0.74 0.177903
Target:  5'- gCCCCUuccggcaccgggAAGGgCUCGCaCCGCCGgccGGGCCa -3'
miRNA:   3'- -GGGGG------------UUCCgGGGCG-GGCGGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 120220 0.79 0.072108
Target:  5'- gCCCC-GGGCCguuggCC-CCCGCCGAGGCCa -3'
miRNA:   3'- gGGGGuUCCGG-----GGcGGGCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 118982 0.68 0.393231
Target:  5'- gCUCCCAAcGCCCCugGCCCGCgAGauagucgcgcGGCUg -3'
miRNA:   3'- -GGGGGUUcCGGGG--CGGGCGgUU----------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 118866 0.72 0.239115
Target:  5'- uCCCCCGucgaccucugcaacgGGGaucccgucagccucgUCCCGCCCGUCuucgAGGGCCa -3'
miRNA:   3'- -GGGGGU---------------UCC---------------GGGGCGGGCGG----UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 118284 0.69 0.36253
Target:  5'- aCCCCCu-GuCCCCGCCCcccCCAgggGGGCUu -3'
miRNA:   3'- -GGGGGuuCcGGGGCGGGc--GGU---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.