miRNA display CGI


Results 41 - 60 of 495 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 121773 0.66 0.540392
Target:  5'- cUCCCCAGGcGUCCUcgGUCUcgGgCGGGGCCg -3'
miRNA:   3'- -GGGGGUUC-CGGGG--CGGG--CgGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 24385 0.66 0.540392
Target:  5'- gCCCgCCGccGCCgCCGCCCcguuGCCGucGGCg -3'
miRNA:   3'- -GGG-GGUucCGG-GGCGGG----CGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 92948 0.66 0.540392
Target:  5'- gCCgCCGuGGCCCUgcguGCCCggaacguggacGCCGuGGCCc -3'
miRNA:   3'- -GGgGGUuCCGGGG----CGGG-----------CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 145886 0.66 0.540392
Target:  5'- cCCCCCA---CCCCGaCCGCCGccGCg -3'
miRNA:   3'- -GGGGGUuccGGGGCgGGCGGUucCGg -5'
5221 5' -65.2 NC_001798.1 + 77826 0.66 0.540392
Target:  5'- aCCCCCGGGaCuUCCGCaacgCGCCGAgcaggcgcucgcGGCCa -3'
miRNA:   3'- -GGGGGUUCcG-GGGCGg---GCGGUU------------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 75457 0.66 0.531128
Target:  5'- --gCCGGGGUggCCgGCCCgGCCGcGGCCc -3'
miRNA:   3'- gggGGUUCCG--GGgCGGG-CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 55928 0.66 0.531128
Target:  5'- gCCCCGAcgaucGCUCCGa-CGCCGauccAGGCCa -3'
miRNA:   3'- gGGGGUUc----CGGGGCggGCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23341 0.66 0.521922
Target:  5'- gCCgCCGGcGCgCCC-CCCGCCGGcgcucGGCCg -3'
miRNA:   3'- -GGgGGUUcCG-GGGcGGGCGGUU-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 104411 0.66 0.521922
Target:  5'- uUCgCGAGGagCCGCCgaagcacgGCCAGGGCCg -3'
miRNA:   3'- gGGgGUUCCggGGCGGg-------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 115495 0.66 0.521922
Target:  5'- aCCCCguCGAGGCCgCGaauCCGUaCGGGGCg -3'
miRNA:   3'- -GGGG--GUUCCGGgGCg--GGCG-GUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 149972 0.66 0.521922
Target:  5'- aCgCCGAcgggggcgcGGCgCCCGCggaCGCCGGGGCg -3'
miRNA:   3'- gGgGGUU---------CCG-GGGCGg--GCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 34924 0.66 0.525597
Target:  5'- gCCUCCGGGGCCCCuuuCgCGCCuuucgcgaacgcgcGGcGCCg -3'
miRNA:   3'- -GGGGGUUCCGGGGc--GgGCGGu-------------UC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 61774 0.66 0.525597
Target:  5'- uCCCCCAucaccgacuccAGGCCCaguuuCGCcuuuuccaacaugcgCCGCCGcGGGCa -3'
miRNA:   3'- -GGGGGU-----------UCCGGG-----GCG---------------GGCGGU-UCCGg -5'
5221 5' -65.2 NC_001798.1 + 61469 0.66 0.530205
Target:  5'- gCCUCC-GGGCCCCGgagggcuacuuuaCCC-CCAucGCCg -3'
miRNA:   3'- -GGGGGuUCCGGGGC-------------GGGcGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 76572 0.66 0.530205
Target:  5'- gUCCCGGcgaccGGCCCCGCgCCGUacgucgaCGGGGgCg -3'
miRNA:   3'- gGGGGUU-----CCGGGGCG-GGCG-------GUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 141787 0.66 0.531128
Target:  5'- gCUCCCAGGGgCUCaGUCUGgaCAAGGUCg -3'
miRNA:   3'- -GGGGGUUCCgGGG-CGGGCg-GUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 458 0.66 0.531128
Target:  5'- gUCCCGcGGCCgCCuCCC-CCGcGGCCg -3'
miRNA:   3'- gGGGGUuCCGG-GGcGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 9021 0.66 0.531128
Target:  5'- gCCCCGAGacCCaCCGCCCcCCGcaGCCa -3'
miRNA:   3'- gGGGGUUCc-GG-GGCGGGcGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 25607 0.66 0.531128
Target:  5'- gCgCCGggggcGGGCCCCccccggagugGUCCGCCGAGcGCg -3'
miRNA:   3'- gGgGGU-----UCCGGGG----------CGGGCGGUUC-CGg -5'
5221 5' -65.2 NC_001798.1 + 27472 0.66 0.531128
Target:  5'- gUCCCC---GUCCUGCCgCGCgGGGGCg -3'
miRNA:   3'- -GGGGGuucCGGGGCGG-GCGgUUCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.