miRNA display CGI


Results 101 - 120 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 44967 0.66 0.503702
Target:  5'- --gCCGcGGCUCCGCCCuCgGAGGCg -3'
miRNA:   3'- gggGGUuCCGGGGCGGGcGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 40819 0.66 0.503702
Target:  5'- gCCCCCuggGGGCCgCUGguUCCGCguuuuugGGGGCCg -3'
miRNA:   3'- -GGGGGu--UCCGG-GGC--GGGCGg------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 109247 0.66 0.503702
Target:  5'- gCCUCgCGGGGCugCUCGCCuCGUCGGGGUUu -3'
miRNA:   3'- -GGGG-GUUCCG--GGGCGG-GCGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 61693 0.66 0.503702
Target:  5'- --gCCAAGGCgauCCUgGCCCGCaCGAcGGCCc -3'
miRNA:   3'- gggGGUUCCG---GGG-CGGGCG-GUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 13661 0.66 0.498289
Target:  5'- gUCCCAccgcgacaacuagcaGGGCCgCCGUCCcgacGCCGgAGGUCa -3'
miRNA:   3'- gGGGGU---------------UCCGG-GGCGGG----CGGU-UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 80239 0.66 0.510049
Target:  5'- cCCCCCGacccgGGGCCUCcuguucggcacgcgGCUggccgacuggCGCCGGGGCa -3'
miRNA:   3'- -GGGGGU-----UCCGGGG--------------CGG----------GCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 147052 0.66 0.511868
Target:  5'- gCCCCGgccggagGGGcCCCCGCaCC-UCGGcGGCCg -3'
miRNA:   3'- gGGGGU-------UCC-GGGGCG-GGcGGUU-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 25492 0.66 0.521922
Target:  5'- gCCUC-GGGCCCgcugCGCCgCGCgGcGGCCu -3'
miRNA:   3'- gGGGGuUCCGGG----GCGG-GCGgUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 75631 0.66 0.521922
Target:  5'- gCCCUCGcuaagcuGGUCCUGgUCGCCAGGGaCg -3'
miRNA:   3'- -GGGGGUu------CCGGGGCgGGCGGUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 96908 0.66 0.521005
Target:  5'- gCCCCAcgccgccGGGCUgucggacgCCGCCCGCgcgCGAGcGCUc -3'
miRNA:   3'- gGGGGU-------UCCGG--------GGCGGGCG---GUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 19982 0.66 0.516428
Target:  5'- gCCCCGccggacgcggauuccGGGuucuCCCgGCCgGCCGgggaGGGCCc -3'
miRNA:   3'- gGGGGU---------------UCC----GGGgCGGgCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 147087 0.66 0.512779
Target:  5'- gCCCCCuccGGCgCCGCgCGUUcgcgaAAGGCg -3'
miRNA:   3'- -GGGGGuu-CCGgGGCGgGCGG-----UUCCGg -5'
5221 5' -65.2 NC_001798.1 + 101460 0.66 0.512779
Target:  5'- cUCCCCGugguagucuuccGGGCCUuccguCGCgUGUgGGGGCCa -3'
miRNA:   3'- -GGGGGU------------UCCGGG-----GCGgGCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 71002 0.66 0.512779
Target:  5'- -aCCC--GGCuaucaugauCCCGCCCcUCGAGGCCa -3'
miRNA:   3'- ggGGGuuCCG---------GGGCGGGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 109798 0.66 0.512779
Target:  5'- aUCUCC-GGGCCgCGCuaGCCAGGaCCg -3'
miRNA:   3'- -GGGGGuUCCGGgGCGggCGGUUCcGG- -5'
5221 5' -65.2 NC_001798.1 + 142685 0.66 0.512779
Target:  5'- cUCCCCA---CCCCGCCCGCUu--GCa -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGCGGuucCGg -5'
5221 5' -65.2 NC_001798.1 + 87845 0.66 0.512779
Target:  5'- uUCCaaaCAGGGCCuuGaaCGUCAcgcAGGCCg -3'
miRNA:   3'- -GGGg--GUUCCGGggCggGCGGU---UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 85789 0.66 0.512779
Target:  5'- gCCCUCAucGGGaCCCUGgCCuCCGGGGgCg -3'
miRNA:   3'- -GGGGGU--UCC-GGGGCgGGcGGUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 82096 0.66 0.512779
Target:  5'- gCCUCAcGcGCCCCGCggUCGCCucgcucucGGCCu -3'
miRNA:   3'- gGGGGUuC-CGGGGCG--GGCGGuu------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 26291 0.66 0.512779
Target:  5'- gCgCUggGGCCUgggCGCgCCGCUgcGGCCc -3'
miRNA:   3'- gGgGGuuCCGGG---GCG-GGCGGuuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.