Results 121 - 140 of 495 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5221 | 5' | -65.2 | NC_001798.1 | + | 21369 | 0.66 | 0.494695 |
Target: 5'- uCCCCCc-GGCCCguccccccgGCCCGUCcccccGGCCc -3' miRNA: 3'- -GGGGGuuCCGGGg--------CGGGCGGuu---CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 18280 | 0.66 | 0.494695 |
Target: 5'- uCCUCCGcggggguauaaaAGGUgCUCGCCgggaagGCCGGGGCCg -3' miRNA: 3'- -GGGGGU------------UCCG-GGGCGGg-----CGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 65737 | 0.66 | 0.503702 |
Target: 5'- aCCUUCAGGGCCggcaugaUGCUggcggUGCCGGGGCUg -3' miRNA: 3'- -GGGGGUUCCGGg------GCGG-----GCGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 149579 | 0.66 | 0.503702 |
Target: 5'- uCCCCCGugaccGUCuuGUUcacguaaggCGCCAGGGCCa -3' miRNA: 3'- -GGGGGUuc---CGGggCGG---------GCGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 51435 | 0.66 | 0.503702 |
Target: 5'- gCCCCGGGGCgCgGCCUuccgcgacgGUCGagauucucgcGGGCCg -3' miRNA: 3'- gGGGGUUCCGgGgCGGG---------CGGU----------UCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 101460 | 0.66 | 0.512779 |
Target: 5'- cUCCCCGugguagucuuccGGGCCUuccguCGCgUGUgGGGGCCa -3' miRNA: 3'- -GGGGGU------------UCCGGG-----GCGgGCGgUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 71002 | 0.66 | 0.512779 |
Target: 5'- -aCCC--GGCuaucaugauCCCGCCCcUCGAGGCCa -3' miRNA: 3'- ggGGGuuCCG---------GGGCGGGcGGUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 109798 | 0.66 | 0.512779 |
Target: 5'- aUCUCC-GGGCCgCGCuaGCCAGGaCCg -3' miRNA: 3'- -GGGGGuUCCGGgGCGggCGGUUCcGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 142685 | 0.66 | 0.512779 |
Target: 5'- cUCCCCA---CCCCGCCCGCUu--GCa -3' miRNA: 3'- -GGGGGUuccGGGGCGGGCGGuucCGg -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 87845 | 0.66 | 0.512779 |
Target: 5'- uUCCaaaCAGGGCCuuGaaCGUCAcgcAGGCCg -3' miRNA: 3'- -GGGg--GUUCCGGggCggGCGGU---UCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 85789 | 0.66 | 0.512779 |
Target: 5'- gCCCUCAucGGGaCCCUGgCCuCCGGGGgCg -3' miRNA: 3'- -GGGGGU--UCC-GGGGCgGGcGGUUCCgG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 82096 | 0.66 | 0.512779 |
Target: 5'- gCCUCAcGcGCCCCGCggUCGCCucgcucucGGCCu -3' miRNA: 3'- gGGGGUuC-CGGGGCG--GGCGGuu------CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 26291 | 0.66 | 0.512779 |
Target: 5'- gCgCUggGGCCUgggCGCgCCGCUgcGGCCc -3' miRNA: 3'- gGgGGuuCCGGG---GCG-GGCGGuuCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 147052 | 0.66 | 0.511868 |
Target: 5'- gCCCCGgccggagGGGcCCCCGCaCC-UCGGcGGCCg -3' miRNA: 3'- gGGGGU-------UCC-GGGGCG-GGcGGUU-CCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 80239 | 0.66 | 0.510049 |
Target: 5'- cCCCCCGacccgGGGCCUCcuguucggcacgcgGCUggccgacuggCGCCGGGGCa -3' miRNA: 3'- -GGGGGU-----UCCGGGG--------------CGG----------GCGGUUCCGg -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 47401 | 0.66 | 0.510049 |
Target: 5'- gCCCCCGuggguuacgcAGGCCCuCGCugcucucccguaccCCGCC--GGUCu -3' miRNA: 3'- -GGGGGU----------UCCGGG-GCG--------------GGCGGuuCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 74655 | 0.66 | 0.507324 |
Target: 5'- nCCCCCGggGGGCCUCggGCCCacccgacacaccgcaGgCGGGGCa -3' miRNA: 3'- -GGGGGU--UCCGGGG--CGGG---------------CgGUUCCGg -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 81021 | 0.66 | 0.507324 |
Target: 5'- gCCCCCc-GGCCCC-CCugaCGUgcgguuugugggcagCGAGGCCa -3' miRNA: 3'- -GGGGGuuCCGGGGcGG---GCG---------------GUUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 146246 | 0.66 | 0.503702 |
Target: 5'- cCCCCCGccgcccgacgaAGGagaCCCaaGCaCCGCagccggaGAGGCCg -3' miRNA: 3'- -GGGGGU-----------UCCg--GGG--CG-GGCGg------UUCCGG- -5' |
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5221 | 5' | -65.2 | NC_001798.1 | + | 135294 | 0.66 | 0.503702 |
Target: 5'- gCCCCCucGGaGCCCUGg--GCCcGGGCCg -3' miRNA: 3'- -GGGGGu-UC-CGGGGCgggCGGuUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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