miRNA display CGI


Results 21 - 40 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 134429 0.66 0.531128
Target:  5'- aCCCgCu-GGCCCUGUCCGCgCGcgucGCCg -3'
miRNA:   3'- -GGGgGuuCCGGGGCGGGCG-GUuc--CGG- -5'
5221 5' -65.2 NC_001798.1 + 61469 0.66 0.530205
Target:  5'- gCCUCC-GGGCCCCGgagggcuacuuuaCCC-CCAucGCCg -3'
miRNA:   3'- -GGGGGuUCCGGGGC-------------GGGcGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 76572 0.66 0.530205
Target:  5'- gUCCCGGcgaccGGCCCCGCgCCGUacgucgaCGGGGgCg -3'
miRNA:   3'- gGGGGUU-----CCGGGGCG-GGCG-------GUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 61774 0.66 0.525597
Target:  5'- uCCCCCAucaccgacuccAGGCCCaguuuCGCcuuuuccaacaugcgCCGCCGcGGGCa -3'
miRNA:   3'- -GGGGGU-----------UCCGGG-----GCG---------------GGCGGU-UCCGg -5'
5221 5' -65.2 NC_001798.1 + 34924 0.66 0.525597
Target:  5'- gCCUCCGGGGCCCCuuuCgCGCCuuucgcgaacgcgcGGcGCCg -3'
miRNA:   3'- -GGGGGUUCCGGGGc--GgGCGGu-------------UC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 75631 0.66 0.521922
Target:  5'- gCCCUCGcuaagcuGGUCCUGgUCGCCAGGGaCg -3'
miRNA:   3'- -GGGGGUu------CCGGGGCgGGCGGUUCCgG- -5'
5221 5' -65.2 NC_001798.1 + 25492 0.66 0.521922
Target:  5'- gCCUC-GGGCCCgcugCGCCgCGCgGcGGCCu -3'
miRNA:   3'- gGGGGuUCCGGG----GCGG-GCGgUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 40317 0.66 0.521922
Target:  5'- cUCCCCGucGGGCgucaCCGCCCccGCCcccGCCg -3'
miRNA:   3'- -GGGGGU--UCCGg---GGCGGG--CGGuucCGG- -5'
5221 5' -65.2 NC_001798.1 + 138160 0.66 0.521922
Target:  5'- gCCCCC-GGGUCCUGggggcgcgaCCCGC---GGCCg -3'
miRNA:   3'- -GGGGGuUCCGGGGC---------GGGCGguuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 23341 0.66 0.521922
Target:  5'- gCCgCCGGcGCgCCC-CCCGCCGGcgcucGGCCg -3'
miRNA:   3'- -GGgGGUUcCG-GGGcGGGCGGUU-----CCGG- -5'
5221 5' -65.2 NC_001798.1 + 104411 0.66 0.521922
Target:  5'- uUCgCGAGGagCCGCCgaagcacgGCCAGGGCCg -3'
miRNA:   3'- gGGgGUUCCggGGCGGg-------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 115495 0.66 0.521922
Target:  5'- aCCCCguCGAGGCCgCGaauCCGUaCGGGGCg -3'
miRNA:   3'- -GGGG--GUUCCGGgGCg--GGCG-GUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 149972 0.66 0.521922
Target:  5'- aCgCCGAcgggggcgcGGCgCCCGCggaCGCCGGGGCg -3'
miRNA:   3'- gGgGGUU---------CCG-GGGCGg--GCGGUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 96908 0.66 0.521005
Target:  5'- gCCCCAcgccgccGGGCUgucggacgCCGCCCGCgcgCGAGcGCUc -3'
miRNA:   3'- gGGGGU-------UCCGG--------GGCGGGCG---GUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 19982 0.66 0.516428
Target:  5'- gCCCCGccggacgcggauuccGGGuucuCCCgGCCgGCCGgggaGGGCCc -3'
miRNA:   3'- gGGGGU---------------UCC----GGGgCGGgCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 142685 0.66 0.512779
Target:  5'- cUCCCCA---CCCCGCCCGCUu--GCa -3'
miRNA:   3'- -GGGGGUuccGGGGCGGGCGGuucCGg -5'
5221 5' -65.2 NC_001798.1 + 109798 0.66 0.512779
Target:  5'- aUCUCC-GGGCCgCGCuaGCCAGGaCCg -3'
miRNA:   3'- -GGGGGuUCCGGgGCGggCGGUUCcGG- -5'
5221 5' -65.2 NC_001798.1 + 71002 0.66 0.512779
Target:  5'- -aCCC--GGCuaucaugauCCCGCCCcUCGAGGCCa -3'
miRNA:   3'- ggGGGuuCCG---------GGGCGGGcGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 101460 0.66 0.512779
Target:  5'- cUCCCCGugguagucuuccGGGCCUuccguCGCgUGUgGGGGCCa -3'
miRNA:   3'- -GGGGGU------------UCCGGG-----GCGgGCGgUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 87845 0.66 0.512779
Target:  5'- uUCCaaaCAGGGCCuuGaaCGUCAcgcAGGCCg -3'
miRNA:   3'- -GGGg--GUUCCGGggCggGCGGU---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.