miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 36230 0.69 0.298882
Target:  5'- cCGCCGcGCCcgcguuucugccGCCCGcGCgCUCCUGUGUGg -3'
miRNA:   3'- -GCGGC-CGGu-----------CGGGU-CG-GAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 61963 0.69 0.293706
Target:  5'- aCGCCuacaucaacucgGGUCAGCUggaGGCCgacgacgCCUGCGCGa -3'
miRNA:   3'- -GCGG------------CCGGUCGGg--UCGGa------GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 147205 0.69 0.287336
Target:  5'- cCGgCGGuCCGGCCCgGGCCcCCggcggaGCGCGg -3'
miRNA:   3'- -GCgGCC-GGUCGGG-UCGGaGGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 78821 0.69 0.287336
Target:  5'- cCGCCcgcGGCgaCGGcCCCGGCC-CCUGgCGCGg -3'
miRNA:   3'- -GCGG---CCG--GUC-GGGUCGGaGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 126850 0.69 0.287336
Target:  5'- -aUCGGCCAGCUgGcGUC-CCUGCGCGc -3'
miRNA:   3'- gcGGCCGGUCGGgU-CGGaGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 87728 0.69 0.287336
Target:  5'- gCGCCGGCCcccgccGGCCCgaaccccgcGGCCcugagCC-GCGCGg -3'
miRNA:   3'- -GCGGCCGG------UCGGG---------UCGGa----GGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 2285 0.69 0.306777
Target:  5'- gCGCgCGGCCAGCgaGGCCagCgcGCGCGg -3'
miRNA:   3'- -GCG-GCCGGUCGggUCGGagGa-CGCGC- -5'
5226 5' -66 NC_001798.1 + 68787 0.69 0.306777
Target:  5'- gGCCGGUguGUgUGGCCUCCUGgGg- -3'
miRNA:   3'- gCGGCCGguCGgGUCGGAGGACgCgc -5'
5226 5' -66 NC_001798.1 + 126431 0.69 0.320288
Target:  5'- gGCCcugcGGCCAagcuaaggcGCCC-GCC-CCUGCGCa -3'
miRNA:   3'- gCGG----CCGGU---------CGGGuCGGaGGACGCGc -5'
5226 5' -66 NC_001798.1 + 105282 0.69 0.320288
Target:  5'- gGCCgcGGCC-GCCgCGGUCUCCaGCGCc -3'
miRNA:   3'- gCGG--CCGGuCGG-GUCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 94440 0.69 0.320288
Target:  5'- gGCCGGCCagacGGCCCccgccgagagcAGCUUCgaGgGCGa -3'
miRNA:   3'- gCGGCCGG----UCGGG-----------UCGGAGgaCgCGC- -5'
5226 5' -66 NC_001798.1 + 91513 0.69 0.320288
Target:  5'- cCGgCGGaCCcgcGCCCGGgucCCUUCUGCGCGu -3'
miRNA:   3'- -GCgGCC-GGu--CGGGUC---GGAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 3794 0.69 0.320288
Target:  5'- gCGCCcgaGGCCucgaaccgGGCCCGcGCCUCCUcCGCc -3'
miRNA:   3'- -GCGG---CCGG--------UCGGGU-CGGAGGAcGCGc -5'
5226 5' -66 NC_001798.1 + 70315 0.69 0.313477
Target:  5'- gCGgCGGUCGGCCCGGCggag-GCGCGg -3'
miRNA:   3'- -GCgGCCGGUCGGGUCGgaggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 38485 0.69 0.312128
Target:  5'- aCGCCGGCaucGCCCcggAGUCUCCgccccacccgccGCGCGc -3'
miRNA:   3'- -GCGGCCGgu-CGGG---UCGGAGGa-----------CGCGC- -5'
5226 5' -66 NC_001798.1 + 115751 0.69 0.306777
Target:  5'- -cCCGGCCGGUCCgggggcauccaGGCCaCCUGgCGCGu -3'
miRNA:   3'- gcGGCCGGUCGGG-----------UCGGaGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 43066 0.7 0.281074
Target:  5'- cCGCCGGCCGagcGCgCCGGgCUCggGCGCc -3'
miRNA:   3'- -GCGGCCGGU---CG-GGUCgGAGgaCGCGc -5'
5226 5' -66 NC_001798.1 + 64857 0.7 0.281074
Target:  5'- aG-CGGCCGGCCCGGacaUgCUGCGCu -3'
miRNA:   3'- gCgGCCGGUCGGGUCgg-AgGACGCGc -5'
5226 5' -66 NC_001798.1 + 121436 0.7 0.274922
Target:  5'- -cCCGGCgCA-CCCGGaCCUCCUGcCGCGc -3'
miRNA:   3'- gcGGCCG-GUcGGGUC-GGAGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 28998 0.7 0.274922
Target:  5'- gCGCCGGCCAaCCgCGcGCCgCC-GCGCGg -3'
miRNA:   3'- -GCGGCCGGUcGG-GU-CGGaGGaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.