miRNA display CGI


Results 101 - 120 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 112641 0.7 0.251387
Target:  5'- aCGCaCGGCCGGCCUuuuaaGGacaaCUCCggGCGCa -3'
miRNA:   3'- -GCG-GCCGGUCGGG-----UCg---GAGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 71082 0.7 0.251387
Target:  5'- aGCCGcGUCAGCCCgcGGUCggCgUGCGCGc -3'
miRNA:   3'- gCGGC-CGGUCGGG--UCGGa-GgACGCGC- -5'
5226 5' -66 NC_001798.1 + 2367 0.7 0.250821
Target:  5'- aGCuCGGCCAcgGCCCgcggggcgcaguaGGCCUCCaGgGCGg -3'
miRNA:   3'- gCG-GCCGGU--CGGG-------------UCGGAGGaCgCGC- -5'
5226 5' -66 NC_001798.1 + 24586 0.7 0.267085
Target:  5'- gGCgGGCCGcguggccguggaguGCCUGGCCgCCUGcCGCGg -3'
miRNA:   3'- gCGgCCGGU--------------CGGGUCGGaGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 3122 0.7 0.268877
Target:  5'- --aCGGCCacgcGGCCC-GCCUCC-GCGCGc -3'
miRNA:   3'- gcgGCCGG----UCGGGuCGGAGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 128151 0.7 0.268877
Target:  5'- gCGCCa-CCuGCgCGGCCUgCUGCGCGg -3'
miRNA:   3'- -GCGGccGGuCGgGUCGGAgGACGCGC- -5'
5226 5' -66 NC_001798.1 + 76026 0.7 0.281074
Target:  5'- cCGCCcGCCcugGGCCCcgaGGCCaUCCagGCGCGg -3'
miRNA:   3'- -GCGGcCGG---UCGGG---UCGG-AGGa-CGCGC- -5'
5226 5' -66 NC_001798.1 + 43066 0.7 0.281074
Target:  5'- cCGCCGGCCGagcGCgCCGGgCUCggGCGCc -3'
miRNA:   3'- -GCGGCCGGU---CG-GGUCgGAGgaCGCGc -5'
5226 5' -66 NC_001798.1 + 64857 0.7 0.281074
Target:  5'- aG-CGGCCGGCCCGGacaUgCUGCGCu -3'
miRNA:   3'- gCgGCCGGUCGGGUCgg-AgGACGCGc -5'
5226 5' -66 NC_001798.1 + 121436 0.7 0.274922
Target:  5'- -cCCGGCgCA-CCCGGaCCUCCUGcCGCGc -3'
miRNA:   3'- gcGGCCG-GUcGGGUC-GGAGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 28998 0.7 0.274922
Target:  5'- gCGCCGGCCAaCCgCGcGCCgCC-GCGCGg -3'
miRNA:   3'- -GCGGCCGGUcGG-GU-CGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 26344 0.7 0.274922
Target:  5'- aCGCCGuGCgcggCGGCCCGGCggagCUGCGCGg -3'
miRNA:   3'- -GCGGC-CG----GUCGGGUCGgag-GACGCGC- -5'
5226 5' -66 NC_001798.1 + 146755 0.7 0.268877
Target:  5'- cCGCCGGagAGCCCgAGCCccgCCcGCGUGu -3'
miRNA:   3'- -GCGGCCggUCGGG-UCGGa--GGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 71190 0.71 0.219227
Target:  5'- gCGCUGGCCAucuuccGUCCGGCCgucaccggCCUGCuGCa -3'
miRNA:   3'- -GCGGCCGGU------CGGGUCGGa-------GGACG-CGc -5'
5226 5' -66 NC_001798.1 + 24065 0.71 0.224332
Target:  5'- gCGCUGGaCCAGgCCuGCUUCCggaucucggGCGCGg -3'
miRNA:   3'- -GCGGCC-GGUCgGGuCGGAGGa--------CGCGC- -5'
5226 5' -66 NC_001798.1 + 95201 0.71 0.224332
Target:  5'- gGCCGGgaaCUGGgCCAGCCUgCUGgGCGg -3'
miRNA:   3'- gCGGCC---GGUCgGGUCGGAgGACgCGC- -5'
5226 5' -66 NC_001798.1 + 25272 0.71 0.229538
Target:  5'- cCGCCaGCCgccggGGCCCAGCCacacgCCgGCGCc -3'
miRNA:   3'- -GCGGcCGG-----UCGGGUCGGa----GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 100874 0.71 0.234845
Target:  5'- gGCCGGCCuGGUCgCGGCCUUCUuCGCc -3'
miRNA:   3'- gCGGCCGG-UCGG-GUCGGAGGAcGCGc -5'
5226 5' -66 NC_001798.1 + 71248 0.71 0.240255
Target:  5'- cCGCCGG--GGCCCAGCaacggCUCCUcGCGCu -3'
miRNA:   3'- -GCGGCCggUCGGGUCG-----GAGGA-CGCGc -5'
5226 5' -66 NC_001798.1 + 111213 0.71 0.214222
Target:  5'- uGCuCGGCCAcgGuCCCGGCCgCCaGCGCGu -3'
miRNA:   3'- gCG-GCCGGU--C-GGGUCGGaGGaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.