miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 35744 0.68 0.327209
Target:  5'- cCGcCCGGCCGcccacuccccGCUCGGCCUCUccgGCuGCGg -3'
miRNA:   3'- -GC-GGCCGGU----------CGGGUCGGAGGa--CG-CGC- -5'
5226 5' -66 NC_001798.1 + 137342 0.68 0.332119
Target:  5'- gGUCGGCCAucccugcguucgacGcCCCAGCCcuggUCCgGCGCa -3'
miRNA:   3'- gCGGCCGGU--------------C-GGGUCGG----AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 82071 0.68 0.333532
Target:  5'- gGCCccgcGGCCGGCCCAccccggcGCCUCaC-GCGCc -3'
miRNA:   3'- gCGG----CCGGUCGGGU-------CGGAG-GaCGCGc -5'
5226 5' -66 NC_001798.1 + 153828 0.68 0.33424
Target:  5'- gGCgCGGCguGCggGGCCUCCgGCGCc -3'
miRNA:   3'- gCG-GCCGguCGggUCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 94192 0.68 0.33424
Target:  5'- uGCgGGCCGuGCCCccuGCugcagCUCCUcGCGCGg -3'
miRNA:   3'- gCGgCCGGU-CGGGu--CG-----GAGGA-CGCGC- -5'
5226 5' -66 NC_001798.1 + 70959 0.68 0.33424
Target:  5'- cCGCCGcuGCUGGCCCAGUUUCagcacacgGUGCGg -3'
miRNA:   3'- -GCGGC--CGGUCGGGUCGGAGga------CGCGC- -5'
5226 5' -66 NC_001798.1 + 134914 0.68 0.33424
Target:  5'- uGCCGGCC-GCCgCcGCCgCCgagucgGCGCGu -3'
miRNA:   3'- gCGGCCGGuCGG-GuCGGaGGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 60165 0.68 0.33424
Target:  5'- uGgCGGCCgcuuGGCCC-GCCUUCUucaGCGCGc -3'
miRNA:   3'- gCgGCCGG----UCGGGuCGGAGGA---CGCGC- -5'
5226 5' -66 NC_001798.1 + 106651 0.68 0.33424
Target:  5'- aCGCCGGCCAa--CAGCaCgcgCCUGCGUu -3'
miRNA:   3'- -GCGGCCGGUcggGUCG-Ga--GGACGCGc -5'
5226 5' -66 NC_001798.1 + 92274 0.68 0.33424
Target:  5'- gGCCGcGCCuGUCCGGCCgaaggCCUGgaGCu -3'
miRNA:   3'- gCGGC-CGGuCGGGUCGGa----GGACg-CGc -5'
5226 5' -66 NC_001798.1 + 150282 0.68 0.33424
Target:  5'- gGUCGcGCCuGCCCGGCCcagacUCUGUGCu -3'
miRNA:   3'- gCGGC-CGGuCGGGUCGGa----GGACGCGc -5'
5226 5' -66 NC_001798.1 + 134374 0.68 0.33424
Target:  5'- cCGCCGGCCGcuccucGCgCCGcCCUCCUGgaCGUGg -3'
miRNA:   3'- -GCGGCCGGU------CG-GGUcGGAGGAC--GCGC- -5'
5226 5' -66 NC_001798.1 + 25024 0.68 0.341381
Target:  5'- uCGCUcGCCGcGCCC-GCCUCC-GCGCc -3'
miRNA:   3'- -GCGGcCGGU-CGGGuCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 2877 0.68 0.341381
Target:  5'- cCGCCGGCCAcGCgCAGgUcCCcGCGCa -3'
miRNA:   3'- -GCGGCCGGU-CGgGUCgGaGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 35401 0.68 0.348632
Target:  5'- gGCCGGCCGccggauGCCCgcgggGGCCUaaUGCgGCGg -3'
miRNA:   3'- gCGGCCGGU------CGGG-----UCGGAggACG-CGC- -5'
5226 5' -66 NC_001798.1 + 138892 0.68 0.348632
Target:  5'- aGCUGGUCGGUCCgcuugGGCCgCCcgGCGCa -3'
miRNA:   3'- gCGGCCGGUCGGG-----UCGGaGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 28873 0.68 0.348632
Target:  5'- gGCCGGCgGaGCCCcggAGCUccgaaggUCUGCGCGa -3'
miRNA:   3'- gCGGCCGgU-CGGG---UCGGa------GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 25426 0.68 0.355992
Target:  5'- uCGCUGGCCGcgcgcugcgccGCCCcGCCccCCggcgGCGCGc -3'
miRNA:   3'- -GCGGCCGGU-----------CGGGuCGGa-GGa---CGCGC- -5'
5226 5' -66 NC_001798.1 + 70206 0.68 0.355992
Target:  5'- cCGCCGGCC-GCCCucccCCUCgaGCGa- -3'
miRNA:   3'- -GCGGCCGGuCGGGuc--GGAGgaCGCgc -5'
5226 5' -66 NC_001798.1 + 24728 0.68 0.361208
Target:  5'- gGCgCGGCCGcCCCGccgcacgccgacgcGCCccgCCUGCGCGc -3'
miRNA:   3'- gCG-GCCGGUcGGGU--------------CGGa--GGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.