Results 61 - 80 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5226 | 5' | -66 | NC_001798.1 | + | 58948 | 0.67 | 0.386509 |
Target: 5'- cCGCCGaCCAGCCuCAGCCac--GCGCa -3' miRNA: 3'- -GCGGCcGGUCGG-GUCGGaggaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 60165 | 0.68 | 0.33424 |
Target: 5'- uGgCGGCCgcuuGGCCC-GCCUUCUucaGCGCGc -3' miRNA: 3'- gCgGCCGG----UCGGGuCGGAGGA---CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 61865 | 0.78 | 0.0772 |
Target: 5'- cCGCCGGcCCAGCCCggcGGCCcCCUcggGCGCGc -3' miRNA: 3'- -GCGGCC-GGUCGGG---UCGGaGGA---CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 61963 | 0.69 | 0.293706 |
Target: 5'- aCGCCuacaucaacucgGGUCAGCUggaGGCCgacgacgCCUGCGCGa -3' miRNA: 3'- -GCGG------------CCGGUCGGg--UCGGa------GGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 62279 | 0.7 | 0.26294 |
Target: 5'- cCGCCGGgCGGCCCGGCggga-GCGCGc -3' miRNA: 3'- -GCGGCCgGUCGGGUCGgaggaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 64857 | 0.7 | 0.281074 |
Target: 5'- aG-CGGCCGGCCCGGacaUgCUGCGCu -3' miRNA: 3'- gCgGCCGGUCGGGUCgg-AgGACGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 66809 | 0.66 | 0.427002 |
Target: 5'- gCGCgGGUCcgucgcggAGCCCGGCCcggugCCgGCGCc -3' miRNA: 3'- -GCGgCCGG--------UCGGGUCGGa----GGaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 68787 | 0.69 | 0.306777 |
Target: 5'- gGCCGGUguGUgUGGCCUCCUGgGg- -3' miRNA: 3'- gCGGCCGguCGgGUCGGAGGACgCgc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 69304 | 0.66 | 0.435398 |
Target: 5'- gCGCCGGggaCGG-UCAGcCCUCCcGCGCGc -3' miRNA: 3'- -GCGGCCg--GUCgGGUC-GGAGGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 70206 | 0.68 | 0.355992 |
Target: 5'- cCGCCGGCC-GCCCucccCCUCgaGCGa- -3' miRNA: 3'- -GCGGCCGGuCGGGuc--GGAGgaCGCgc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 70315 | 0.69 | 0.313477 |
Target: 5'- gCGgCGGUCGGCCCGGCggag-GCGCGg -3' miRNA: 3'- -GCgGCCGGUCGGGUCGgaggaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 70959 | 0.68 | 0.33424 |
Target: 5'- cCGCCGcuGCUGGCCCAGUUUCagcacacgGUGCGg -3' miRNA: 3'- -GCGGC--CGGUCGGGUCGGAGga------CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 71082 | 0.7 | 0.251387 |
Target: 5'- aGCCGcGUCAGCCCgcGGUCggCgUGCGCGc -3' miRNA: 3'- gCGGC-CGGUCGGG--UCGGa-GgACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 71190 | 0.71 | 0.219227 |
Target: 5'- gCGCUGGCCAucuuccGUCCGGCCgucaccggCCUGCuGCa -3' miRNA: 3'- -GCGGCCGGU------CGGGUCGGa-------GGACG-CGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 71248 | 0.71 | 0.240255 |
Target: 5'- cCGCCGG--GGCCCAGCaacggCUCCUcGCGCu -3' miRNA: 3'- -GCGGCCggUCGGGUCG-----GAGGA-CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 71731 | 1.08 | 0.00044 |
Target: 5'- gCGCCGGCCAGCCCAGCCUCCUGCGCGa -3' miRNA: 3'- -GCGGCCGGUCGGGUCGGAGGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 73012 | 0.66 | 0.461145 |
Target: 5'- gCGCCccCCAGCCCGGCCgcagaCCUcgucGUGCu -3' miRNA: 3'- -GCGGccGGUCGGGUCGGa----GGA----CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 75465 | 0.75 | 0.124944 |
Target: 5'- gGCCGGcCCGGCCgCGGCCcugcuggacuucacCCUGCGCa -3' miRNA: 3'- gCGGCC-GGUCGG-GUCGGa-------------GGACGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 76026 | 0.7 | 0.281074 |
Target: 5'- cCGCCcGCCcugGGCCCcgaGGCCaUCCagGCGCGg -3' miRNA: 3'- -GCGGcCGG---UCGGG---UCGG-AGGa-CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 76300 | 0.72 | 0.190647 |
Target: 5'- uCGCCa-CCAGCCCccaGGCCaUCCUGCuGCGg -3' miRNA: 3'- -GCGGccGGUCGGG---UCGG-AGGACG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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