miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 77434 0.66 0.478749
Target:  5'- gCGCCgGGCCugcGCCCAGCCggagggggaCCaUGcCGCc -3'
miRNA:   3'- -GCGG-CCGGu--CGGGUCGGa--------GG-AC-GCGc -5'
5226 5' -66 NC_001798.1 + 78038 0.67 0.386509
Target:  5'- aCGCCGaGCCccuGGCgCGGCUg-CUGCGCa -3'
miRNA:   3'- -GCGGC-CGG---UCGgGUCGGagGACGCGc -5'
5226 5' -66 NC_001798.1 + 78821 0.69 0.287336
Target:  5'- cCGCCcgcGGCgaCGGcCCCGGCC-CCUGgCGCGg -3'
miRNA:   3'- -GCGG---CCG--GUC-GGGUCGGaGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 78856 0.66 0.452472
Target:  5'- aCGCCGGCC-GCCUgggGGCgCUCUUugauacucgGCGCc -3'
miRNA:   3'- -GCGGCCGGuCGGG---UCG-GAGGA---------CGCGc -5'
5226 5' -66 NC_001798.1 + 79060 0.66 0.452472
Target:  5'- gGCU-GCgGGCCCAGCCggCCUacgaGCGCc -3'
miRNA:   3'- gCGGcCGgUCGGGUCGGa-GGA----CGCGc -5'
5226 5' -66 NC_001798.1 + 80384 0.66 0.461145
Target:  5'- aGuCCGGCCcaGGCCCuggcggcggugAGCgUCCUcggGCGCa -3'
miRNA:   3'- gC-GGCCGG--UCGGG-----------UCGgAGGA---CGCGc -5'
5226 5' -66 NC_001798.1 + 80788 0.7 0.26294
Target:  5'- gCGCCccGGCgGGCCgGacGCCgcCCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGgUCGGgU--CGGa-GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 82071 0.68 0.333532
Target:  5'- gGCCccgcGGCCGGCCCAccccggcGCCUCaC-GCGCc -3'
miRNA:   3'- gCGG----CCGGUCGGGU-------CGGAG-GaCGCGc -5'
5226 5' -66 NC_001798.1 + 86842 0.66 0.427002
Target:  5'- -cCCGGCCcgGGCCCGGCCgcgacaagacCCgGCgGCGg -3'
miRNA:   3'- gcGGCCGG--UCGGGUCGGa---------GGaCG-CGC- -5'
5226 5' -66 NC_001798.1 + 87342 0.79 0.059822
Target:  5'- aCGCuCGGCCAGCCCGagcucuuuuucguGCacacgaUCCUGCGCGg -3'
miRNA:   3'- -GCG-GCCGGUCGGGU-------------CGg-----AGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 87728 0.69 0.287336
Target:  5'- gCGCCGGCCcccgccGGCCCgaaccccgcGGCCcugagCC-GCGCGg -3'
miRNA:   3'- -GCGGCCGG------UCGGG---------UCGGa----GGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 89301 0.71 0.214222
Target:  5'- uGCCGGCC--CCCGGUCUCgC-GCGCGa -3'
miRNA:   3'- gCGGCCGGucGGGUCGGAG-GaCGCGC- -5'
5226 5' -66 NC_001798.1 + 91197 0.72 0.190647
Target:  5'- gCGCUGaGCCGGCCCgagGGCCUUuggCUGCGUu -3'
miRNA:   3'- -GCGGC-CGGUCGGG---UCGGAG---GACGCGc -5'
5226 5' -66 NC_001798.1 + 91343 0.66 0.443036
Target:  5'- cCGCCGGCUuccccccgggggaAGCCgGGCCgCCcGCgGCa -3'
miRNA:   3'- -GCGGCCGG-------------UCGGgUCGGaGGaCG-CGc -5'
5226 5' -66 NC_001798.1 + 91513 0.69 0.320288
Target:  5'- cCGgCGGaCCcgcGCCCGGgucCCUUCUGCGCGu -3'
miRNA:   3'- -GCgGCC-GGu--CGGGUC---GGAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 92274 0.68 0.33424
Target:  5'- gGCCGcGCCuGUCCGGCCgaaggCCUGgaGCu -3'
miRNA:   3'- gCGGC-CGGuCGGGUCGGa----GGACg-CGc -5'
5226 5' -66 NC_001798.1 + 93061 0.66 0.435398
Target:  5'- gGCCuucgaGGCCAGCCaggguaAGCC-CCagcgggGCGCGc -3'
miRNA:   3'- gCGG-----CCGGUCGGg-----UCGGaGGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 93543 0.73 0.16539
Target:  5'- uCGCCGGCgAGCaCCuGGCCaUgCUGUGCGg -3'
miRNA:   3'- -GCGGCCGgUCG-GG-UCGG-AgGACGCGC- -5'
5226 5' -66 NC_001798.1 + 94192 0.68 0.33424
Target:  5'- uGCgGGCCGuGCCCccuGCugcagCUCCUcGCGCGg -3'
miRNA:   3'- gCGgCCGGU-CGGGu--CG-----GAGGA-CGCGC- -5'
5226 5' -66 NC_001798.1 + 94440 0.69 0.320288
Target:  5'- gGCCGGCCagacGGCCCccgccgagagcAGCUUCgaGgGCGa -3'
miRNA:   3'- gCGGCCGG----UCGGG-----------UCGGAGgaCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.