miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 115528 0.66 0.461145
Target:  5'- aCGUcgCGGCCccGgCCGGCC-CCgGCGCGg -3'
miRNA:   3'- -GCG--GCCGGu-CgGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 113833 0.75 0.12679
Target:  5'- aCGCCGGCCGGUCCucgGGCCUacgUCUGgGUGu -3'
miRNA:   3'- -GCGGCCGGUCGGG---UCGGA---GGACgCGC- -5'
5226 5' -66 NC_001798.1 + 112641 0.7 0.251387
Target:  5'- aCGCaCGGCCGGCCUuuuaaGGacaaCUCCggGCGCa -3'
miRNA:   3'- -GCG-GCCGGUCGGG-----UCg---GAGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 111213 0.71 0.214222
Target:  5'- uGCuCGGCCAcgGuCCCGGCCgCCaGCGCGu -3'
miRNA:   3'- gCG-GCCGGU--C-GGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 109529 0.67 0.386509
Target:  5'- aGCUGGCguucguguuggaCAGCCCcgcGGCCUaugGCGCGg -3'
miRNA:   3'- gCGGCCG------------GUCGGG---UCGGAggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 109355 0.78 0.070511
Target:  5'- uGCUGGCCGGCCUGGCCgCCcggggagcagcgggcUGCGCGg -3'
miRNA:   3'- gCGGCCGGUCGGGUCGGaGG---------------ACGCGC- -5'
5226 5' -66 NC_001798.1 + 106651 0.68 0.33424
Target:  5'- aCGCCGGCCAa--CAGCaCgcgCCUGCGUu -3'
miRNA:   3'- -GCGGCCGGUcggGUCG-Ga--GGACGCGc -5'
5226 5' -66 NC_001798.1 + 105282 0.69 0.320288
Target:  5'- gGCCgcGGCC-GCCgCGGUCUCCaGCGCc -3'
miRNA:   3'- gCGG--CCGGuCGG-GUCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 103016 0.66 0.461145
Target:  5'- gCGcCCGGCCagcgcgAGCUCGGCCUCg-GCGg- -3'
miRNA:   3'- -GC-GGCCGG------UCGGGUCGGAGgaCGCgc -5'
5226 5' -66 NC_001798.1 + 102368 0.66 0.443889
Target:  5'- cCGCCGGa-AGCCCAcCCgCCUG-GCGg -3'
miRNA:   3'- -GCGGCCggUCGGGUcGGaGGACgCGC- -5'
5226 5' -66 NC_001798.1 + 101778 0.75 0.120733
Target:  5'- uGCUGGCguuaacuaaGGCCCGGCCUCC-GCGCc -3'
miRNA:   3'- gCGGCCGg--------UCGGGUCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 100874 0.71 0.234845
Target:  5'- gGCCGGCCuGGUCgCGGCCUUCUuCGCc -3'
miRNA:   3'- gCGGCCGG-UCGG-GUCGGAGGAcGCGc -5'
5226 5' -66 NC_001798.1 + 98788 0.71 0.240255
Target:  5'- cCGCCGGCCAcgCCAGCUgcgcgcgcaCCUGCGgGa -3'
miRNA:   3'- -GCGGCCGGUcgGGUCGGa--------GGACGCgC- -5'
5226 5' -66 NC_001798.1 + 97698 0.77 0.087503
Target:  5'- uCGCUGGCCAGCCUcgGGCgCUgCgUGCGCGa -3'
miRNA:   3'- -GCGGCCGGUCGGG--UCG-GA-GgACGCGC- -5'
5226 5' -66 NC_001798.1 + 96998 0.67 0.39361
Target:  5'- gGCCagGGCCGGCCCgccgcccgccgauAGCuCUUCUGUccGCGa -3'
miRNA:   3'- gCGG--CCGGUCGGG-------------UCG-GAGGACG--CGC- -5'
5226 5' -66 NC_001798.1 + 95201 0.71 0.224332
Target:  5'- gGCCGGgaaCUGGgCCAGCCUgCUGgGCGg -3'
miRNA:   3'- gCGGCC---GGUCgGGUCGGAgGACgCGC- -5'
5226 5' -66 NC_001798.1 + 94579 0.66 0.478749
Target:  5'- gCGCgGGUCG--CCAGCCUCCagaGCGCc -3'
miRNA:   3'- -GCGgCCGGUcgGGUCGGAGGa--CGCGc -5'
5226 5' -66 NC_001798.1 + 94440 0.69 0.320288
Target:  5'- gGCCGGCCagacGGCCCccgccgagagcAGCUUCgaGgGCGa -3'
miRNA:   3'- gCGGCCGG----UCGGG-----------UCGGAGgaCgCGC- -5'
5226 5' -66 NC_001798.1 + 94192 0.68 0.33424
Target:  5'- uGCgGGCCGuGCCCccuGCugcagCUCCUcGCGCGg -3'
miRNA:   3'- gCGgCCGGU-CGGGu--CG-----GAGGA-CGCGC- -5'
5226 5' -66 NC_001798.1 + 93543 0.73 0.16539
Target:  5'- uCGCCGGCgAGCaCCuGGCCaUgCUGUGCGg -3'
miRNA:   3'- -GCGGCCGgUCG-GG-UCGG-AgGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.