Results 61 - 80 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5226 | 5' | -66 | NC_001798.1 | + | 93061 | 0.66 | 0.435398 |
Target: 5'- gGCCuucgaGGCCAGCCaggguaAGCC-CCagcgggGCGCGc -3' miRNA: 3'- gCGG-----CCGGUCGGg-----UCGGaGGa-----CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 92274 | 0.68 | 0.33424 |
Target: 5'- gGCCGcGCCuGUCCGGCCgaaggCCUGgaGCu -3' miRNA: 3'- gCGGC-CGGuCGGGUCGGa----GGACg-CGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 91513 | 0.69 | 0.320288 |
Target: 5'- cCGgCGGaCCcgcGCCCGGgucCCUUCUGCGCGu -3' miRNA: 3'- -GCgGCC-GGu--CGGGUC---GGAGGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 91343 | 0.66 | 0.443036 |
Target: 5'- cCGCCGGCUuccccccgggggaAGCCgGGCCgCCcGCgGCa -3' miRNA: 3'- -GCGGCCGG-------------UCGGgUCGGaGGaCG-CGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 91197 | 0.72 | 0.190647 |
Target: 5'- gCGCUGaGCCGGCCCgagGGCCUUuggCUGCGUu -3' miRNA: 3'- -GCGGC-CGGUCGGG---UCGGAG---GACGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 89301 | 0.71 | 0.214222 |
Target: 5'- uGCCGGCC--CCCGGUCUCgC-GCGCGa -3' miRNA: 3'- gCGGCCGGucGGGUCGGAG-GaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 87728 | 0.69 | 0.287336 |
Target: 5'- gCGCCGGCCcccgccGGCCCgaaccccgcGGCCcugagCC-GCGCGg -3' miRNA: 3'- -GCGGCCGG------UCGGG---------UCGGa----GGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 87342 | 0.79 | 0.059822 |
Target: 5'- aCGCuCGGCCAGCCCGagcucuuuuucguGCacacgaUCCUGCGCGg -3' miRNA: 3'- -GCG-GCCGGUCGGGU-------------CGg-----AGGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 86842 | 0.66 | 0.427002 |
Target: 5'- -cCCGGCCcgGGCCCGGCCgcgacaagacCCgGCgGCGg -3' miRNA: 3'- gcGGCCGG--UCGGGUCGGa---------GGaCG-CGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 82071 | 0.68 | 0.333532 |
Target: 5'- gGCCccgcGGCCGGCCCAccccggcGCCUCaC-GCGCc -3' miRNA: 3'- gCGG----CCGGUCGGGU-------CGGAG-GaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 80788 | 0.7 | 0.26294 |
Target: 5'- gCGCCccGGCgGGCCgGacGCCgcCCUGCGCGa -3' miRNA: 3'- -GCGG--CCGgUCGGgU--CGGa-GGACGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 80384 | 0.66 | 0.461145 |
Target: 5'- aGuCCGGCCcaGGCCCuggcggcggugAGCgUCCUcggGCGCa -3' miRNA: 3'- gC-GGCCGG--UCGGG-----------UCGgAGGA---CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 79060 | 0.66 | 0.452472 |
Target: 5'- gGCU-GCgGGCCCAGCCggCCUacgaGCGCc -3' miRNA: 3'- gCGGcCGgUCGGGUCGGa-GGA----CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 78856 | 0.66 | 0.452472 |
Target: 5'- aCGCCGGCC-GCCUgggGGCgCUCUUugauacucgGCGCc -3' miRNA: 3'- -GCGGCCGGuCGGG---UCG-GAGGA---------CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 78821 | 0.69 | 0.287336 |
Target: 5'- cCGCCcgcGGCgaCGGcCCCGGCC-CCUGgCGCGg -3' miRNA: 3'- -GCGG---CCG--GUC-GGGUCGGaGGAC-GCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 78038 | 0.67 | 0.386509 |
Target: 5'- aCGCCGaGCCccuGGCgCGGCUg-CUGCGCa -3' miRNA: 3'- -GCGGC-CGG---UCGgGUCGGagGACGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 77434 | 0.66 | 0.478749 |
Target: 5'- gCGCCgGGCCugcGCCCAGCCggagggggaCCaUGcCGCc -3' miRNA: 3'- -GCGG-CCGGu--CGGGUCGGa--------GG-AC-GCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 76300 | 0.72 | 0.190647 |
Target: 5'- uCGCCa-CCAGCCCccaGGCCaUCCUGCuGCGg -3' miRNA: 3'- -GCGGccGGUCGGG---UCGG-AGGACG-CGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 76026 | 0.7 | 0.281074 |
Target: 5'- cCGCCcGCCcugGGCCCcgaGGCCaUCCagGCGCGg -3' miRNA: 3'- -GCGGcCGG---UCGGG---UCGG-AGGa-CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 75465 | 0.75 | 0.124944 |
Target: 5'- gGCCGGcCCGGCCgCGGCCcugcuggacuucacCCUGCGCa -3' miRNA: 3'- gCGGCC-GGUCGG-GUCGGa-------------GGACGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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