miRNA display CGI


Results 81 - 100 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 73012 0.66 0.461145
Target:  5'- gCGCCccCCAGCCCGGCCgcagaCCUcgucGUGCu -3'
miRNA:   3'- -GCGGccGGUCGGGUCGGa----GGA----CGCGc -5'
5226 5' -66 NC_001798.1 + 71731 1.08 0.00044
Target:  5'- gCGCCGGCCAGCCCAGCCUCCUGCGCGa -3'
miRNA:   3'- -GCGGCCGGUCGGGUCGGAGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 71248 0.71 0.240255
Target:  5'- cCGCCGG--GGCCCAGCaacggCUCCUcGCGCu -3'
miRNA:   3'- -GCGGCCggUCGGGUCG-----GAGGA-CGCGc -5'
5226 5' -66 NC_001798.1 + 71190 0.71 0.219227
Target:  5'- gCGCUGGCCAucuuccGUCCGGCCgucaccggCCUGCuGCa -3'
miRNA:   3'- -GCGGCCGGU------CGGGUCGGa-------GGACG-CGc -5'
5226 5' -66 NC_001798.1 + 71082 0.7 0.251387
Target:  5'- aGCCGcGUCAGCCCgcGGUCggCgUGCGCGc -3'
miRNA:   3'- gCGGC-CGGUCGGG--UCGGa-GgACGCGC- -5'
5226 5' -66 NC_001798.1 + 70959 0.68 0.33424
Target:  5'- cCGCCGcuGCUGGCCCAGUUUCagcacacgGUGCGg -3'
miRNA:   3'- -GCGGC--CGGUCGGGUCGGAGga------CGCGC- -5'
5226 5' -66 NC_001798.1 + 70315 0.69 0.313477
Target:  5'- gCGgCGGUCGGCCCGGCggag-GCGCGg -3'
miRNA:   3'- -GCgGCCGGUCGGGUCGgaggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 70206 0.68 0.355992
Target:  5'- cCGCCGGCC-GCCCucccCCUCgaGCGa- -3'
miRNA:   3'- -GCGGCCGGuCGGGuc--GGAGgaCGCgc -5'
5226 5' -66 NC_001798.1 + 69304 0.66 0.435398
Target:  5'- gCGCCGGggaCGG-UCAGcCCUCCcGCGCGc -3'
miRNA:   3'- -GCGGCCg--GUCgGGUC-GGAGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 68787 0.69 0.306777
Target:  5'- gGCCGGUguGUgUGGCCUCCUGgGg- -3'
miRNA:   3'- gCGGCCGguCGgGUCGGAGGACgCgc -5'
5226 5' -66 NC_001798.1 + 66809 0.66 0.427002
Target:  5'- gCGCgGGUCcgucgcggAGCCCGGCCcggugCCgGCGCc -3'
miRNA:   3'- -GCGgCCGG--------UCGGGUCGGa----GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 64857 0.7 0.281074
Target:  5'- aG-CGGCCGGCCCGGacaUgCUGCGCu -3'
miRNA:   3'- gCgGCCGGUCGGGUCgg-AgGACGCGc -5'
5226 5' -66 NC_001798.1 + 62279 0.7 0.26294
Target:  5'- cCGCCGGgCGGCCCGGCggga-GCGCGc -3'
miRNA:   3'- -GCGGCCgGUCGGGUCGgaggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 61963 0.69 0.293706
Target:  5'- aCGCCuacaucaacucgGGUCAGCUggaGGCCgacgacgCCUGCGCGa -3'
miRNA:   3'- -GCGG------------CCGGUCGGg--UCGGa------GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 61865 0.78 0.0772
Target:  5'- cCGCCGGcCCAGCCCggcGGCCcCCUcggGCGCGc -3'
miRNA:   3'- -GCGGCC-GGUCGGG---UCGGaGGA---CGCGC- -5'
5226 5' -66 NC_001798.1 + 60165 0.68 0.33424
Target:  5'- uGgCGGCCgcuuGGCCC-GCCUUCUucaGCGCGc -3'
miRNA:   3'- gCgGCCGG----UCGGGuCGGAGGA---CGCGC- -5'
5226 5' -66 NC_001798.1 + 58948 0.67 0.386509
Target:  5'- cCGCCGaCCAGCCuCAGCCac--GCGCa -3'
miRNA:   3'- -GCGGCcGGUCGG-GUCGGaggaCGCGc -5'
5226 5' -66 NC_001798.1 + 58826 0.72 0.199791
Target:  5'- uCGUCGGCCAGCaCCAGCagcgCC-GCGUa -3'
miRNA:   3'- -GCGGCCGGUCG-GGUCGga--GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 56245 0.66 0.435398
Target:  5'- cCGgCGGCCgGGCCCGGCC-CCggaguuacCGCa -3'
miRNA:   3'- -GCgGCCGG-UCGGGUCGGaGGac------GCGc -5'
5226 5' -66 NC_001798.1 + 54581 0.66 0.447311
Target:  5'- gGCCGGCCGGCCaCguauuacacgcauauGGCCggg-GCGCc -3'
miRNA:   3'- gCGGCCGGUCGG-G---------------UCGGaggaCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.