Results 81 - 100 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5226 | 5' | -66 | NC_001798.1 | + | 24490 | 0.67 | 0.402402 |
Target: 5'- gCGCCugagcGCCGcGCCC-GCCUCC-GCGCc -3' miRNA: 3'- -GCGGc----CGGU-CGGGuCGGAGGaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 150173 | 0.67 | 0.394404 |
Target: 5'- gGCgGGCCGccGCCC--CCUCCgcgGCGUGg -3' miRNA: 3'- gCGgCCGGU--CGGGucGGAGGa--CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 96998 | 0.67 | 0.39361 |
Target: 5'- gGCCagGGCCGGCCCgccgcccgccgauAGCuCUUCUGUccGCGa -3' miRNA: 3'- gCGG--CCGGUCGGG-------------UCG-GAGGACG--CGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 122406 | 0.67 | 0.39361 |
Target: 5'- aGCUGGCCacGGCCCugacggaGGCCUgugCCgccgaGCGCGu -3' miRNA: 3'- gCGGCCGG--UCGGG-------UCGGA---GGa----CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 127028 | 0.67 | 0.386509 |
Target: 5'- gGCCGGCCGuCCUGGCCgacuuuagCCUG-GUGa -3' miRNA: 3'- gCGGCCGGUcGGGUCGGa-------GGACgCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 30429 | 0.67 | 0.386509 |
Target: 5'- aCGCCc-CCGGCCCGGCCcCCggccgaGCGCc -3' miRNA: 3'- -GCGGccGGUCGGGUCGGaGGa-----CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 78038 | 0.67 | 0.386509 |
Target: 5'- aCGCCGaGCCccuGGCgCGGCUg-CUGCGCa -3' miRNA: 3'- -GCGGC-CGG---UCGgGUCGGagGACGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 47816 | 0.67 | 0.418703 |
Target: 5'- uCGCgGGCUcucacGGcCCCGGCC-CC-GCGCGc -3' miRNA: 3'- -GCGgCCGG-----UC-GGGUCGGaGGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 66809 | 0.66 | 0.427002 |
Target: 5'- gCGCgGGUCcgucgcggAGCCCGGCCcggugCCgGCGCc -3' miRNA: 3'- -GCGgCCGG--------UCGGGUCGGa----GGaCGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 145557 | 0.66 | 0.427002 |
Target: 5'- gCGUCGcGCCGGCgCCc-CCUCCcgGCGCu -3' miRNA: 3'- -GCGGC-CGGUCG-GGucGGAGGa-CGCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 2483 | 0.66 | 0.443889 |
Target: 5'- gGCgGGCCGGCgggUCAGCg-CCgcgggGCGCGg -3' miRNA: 3'- gCGgCCGGUCG---GGUCGgaGGa----CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 91343 | 0.66 | 0.443036 |
Target: 5'- cCGCCGGCUuccccccgggggaAGCCgGGCCgCCcGCgGCa -3' miRNA: 3'- -GCGGCCGG-------------UCGGgUCGGaGGaCG-CGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 93061 | 0.66 | 0.435398 |
Target: 5'- gGCCuucgaGGCCAGCCaggguaAGCC-CCagcgggGCGCGc -3' miRNA: 3'- gCGG-----CCGGUCGGg-----UCGGaGGa-----CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 69304 | 0.66 | 0.435398 |
Target: 5'- gCGCCGGggaCGG-UCAGcCCUCCcGCGCGc -3' miRNA: 3'- -GCGGCCg--GUCgGGUC-GGAGGaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 56245 | 0.66 | 0.435398 |
Target: 5'- cCGgCGGCCgGGCCCGGCC-CCggaguuacCGCa -3' miRNA: 3'- -GCgGCCGG-UCGGGUCGGaGGac------GCGc -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 32795 | 0.66 | 0.435398 |
Target: 5'- gCGCCGGCCGGCgacGCC-CCcGCGgGc -3' miRNA: 3'- -GCGGCCGGUCGgguCGGaGGaCGCgC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 1663 | 0.66 | 0.435398 |
Target: 5'- aGgCGcGCguGCgCGGCCUCCacgcGCGCGa -3' miRNA: 3'- gCgGC-CGguCGgGUCGGAGGa---CGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 86842 | 0.66 | 0.427002 |
Target: 5'- -cCCGGCCcgGGCCCGGCCgcgacaagacCCgGCgGCGg -3' miRNA: 3'- gcGGCCGG--UCGGGUCGGa---------GGaCG-CGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 151605 | 0.66 | 0.427002 |
Target: 5'- gCGCuCGGCCgggGGCCgGGCCggggGCGUGg -3' miRNA: 3'- -GCG-GCCGG---UCGGgUCGGaggaCGCGC- -5' |
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5226 | 5' | -66 | NC_001798.1 | + | 134287 | 0.66 | 0.427002 |
Target: 5'- gGCCGGUgGGCCCucuucGUCcCgCUGCGCc -3' miRNA: 3'- gCGGCCGgUCGGGu----CGGaG-GACGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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