miRNA display CGI


Results 101 - 120 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 150379 0.67 0.37872
Target:  5'- gGCgGcGCgGGCCCGGCCgcgUCC-GCGCu -3'
miRNA:   3'- gCGgC-CGgUCGGGUCGG---AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 146599 0.68 0.371036
Target:  5'- cCGCgGcGCCagcGGCCCAcGCCUCCcGcCGCa -3'
miRNA:   3'- -GCGgC-CGG---UCGGGU-CGGAGGaC-GCGc -5'
5226 5' -66 NC_001798.1 + 1196 0.68 0.36346
Target:  5'- cCGCCgcGGCCAGCaCC-GUC-CCcGCGCGg -3'
miRNA:   3'- -GCGG--CCGGUCG-GGuCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 24728 0.68 0.361208
Target:  5'- gGCgCGGCCGcCCCGccgcacgccgacgcGCCccgCCUGCGCGc -3'
miRNA:   3'- gCG-GCCGGUcGGGU--------------CGGa--GGACGCGC- -5'
5226 5' -66 NC_001798.1 + 70206 0.68 0.355992
Target:  5'- cCGCCGGCC-GCCCucccCCUCgaGCGa- -3'
miRNA:   3'- -GCGGCCGGuCGGGuc--GGAGgaCGCgc -5'
5226 5' -66 NC_001798.1 + 122406 0.67 0.39361
Target:  5'- aGCUGGCCacGGCCCugacggaGGCCUgugCCgccgaGCGCGu -3'
miRNA:   3'- gCGGCCGG--UCGGG-------UCGGA---GGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 96998 0.67 0.39361
Target:  5'- gGCCagGGCCGGCCCgccgcccgccgauAGCuCUUCUGUccGCGa -3'
miRNA:   3'- gCGG--CCGGUCGGG-------------UCG-GAGGACG--CGC- -5'
5226 5' -66 NC_001798.1 + 32795 0.66 0.435398
Target:  5'- gCGCCGGCCGGCgacGCC-CCcGCGgGc -3'
miRNA:   3'- -GCGGCCGGUCGgguCGGaGGaCGCgC- -5'
5226 5' -66 NC_001798.1 + 1663 0.66 0.435398
Target:  5'- aGgCGcGCguGCgCGGCCUCCacgcGCGCGa -3'
miRNA:   3'- gCgGC-CGguCGgGUCGGAGGa---CGCGC- -5'
5226 5' -66 NC_001798.1 + 86842 0.66 0.427002
Target:  5'- -cCCGGCCcgGGCCCGGCCgcgacaagacCCgGCgGCGg -3'
miRNA:   3'- gcGGCCGG--UCGGGUCGGa---------GGaCG-CGC- -5'
5226 5' -66 NC_001798.1 + 151605 0.66 0.427002
Target:  5'- gCGCuCGGCCgggGGCCgGGCCggggGCGUGg -3'
miRNA:   3'- -GCG-GCCGG---UCGGgUCGGaggaCGCGC- -5'
5226 5' -66 NC_001798.1 + 134287 0.66 0.427002
Target:  5'- gGCCGGUgGGCCCucuucGUCcCgCUGCGCc -3'
miRNA:   3'- gCGGCCGgUCGGGu----CGGaG-GACGCGc -5'
5226 5' -66 NC_001798.1 + 145557 0.66 0.427002
Target:  5'- gCGUCGcGCCGGCgCCc-CCUCCcgGCGCu -3'
miRNA:   3'- -GCGGC-CGGUCG-GGucGGAGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 66809 0.66 0.427002
Target:  5'- gCGCgGGUCcgucgcggAGCCCGGCCcggugCCgGCGCc -3'
miRNA:   3'- -GCGgCCGG--------UCGGGUCGGa----GGaCGCGc -5'
5226 5' -66 NC_001798.1 + 47816 0.67 0.418703
Target:  5'- uCGCgGGCUcucacGGcCCCGGCC-CC-GCGCGc -3'
miRNA:   3'- -GCGgCCGG-----UC-GGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 153696 0.67 0.410502
Target:  5'- gGCCGccGCCGGCgCAGgCUCagGCGCGc -3'
miRNA:   3'- gCGGC--CGGUCGgGUCgGAGgaCGCGC- -5'
5226 5' -66 NC_001798.1 + 21032 0.67 0.410502
Target:  5'- aCGaaGGCgGcGCCCGGCCUgCgagaaaGCGCGg -3'
miRNA:   3'- -GCggCCGgU-CGGGUCGGAgGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 23850 0.67 0.410502
Target:  5'- gGCgGGCUGGgcgacagccgcCCCGGCCUCUgggggGCGCc -3'
miRNA:   3'- gCGgCCGGUC-----------GGGUCGGAGGa----CGCGc -5'
5226 5' -66 NC_001798.1 + 24490 0.67 0.402402
Target:  5'- gCGCCugagcGCCGcGCCC-GCCUCC-GCGCc -3'
miRNA:   3'- -GCGGc----CGGU-CGGGuCGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 150173 0.67 0.394404
Target:  5'- gGCgGGCCGccGCCC--CCUCCgcgGCGUGg -3'
miRNA:   3'- gCGgCCGGU--CGGGucGGAGGa--CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.