miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5227 5' -59.6 NC_001798.1 + 37189 0.66 0.768645
Target:  5'- cGcgCCAGGcgccGCGCCGaacGaCGGGCGCgGCGCc -3'
miRNA:   3'- -CuaGGUCC----CGCGGU---C-GCUCGUG-UGCG- -5'
5227 5' -59.6 NC_001798.1 + 4410 0.66 0.768645
Target:  5'- ---gCGGGGCGCCGGgGgucgcGGCgACAgGCu -3'
miRNA:   3'- cuagGUCCCGCGGUCgC-----UCG-UGUgCG- -5'
5227 5' -59.6 NC_001798.1 + 1657 0.66 0.768645
Target:  5'- gGGUaCAGGcGCGCguGCGcGGCcuccACGCGCg -3'
miRNA:   3'- -CUAgGUCC-CGCGguCGC-UCG----UGUGCG- -5'
5227 5' -59.6 NC_001798.1 + 87157 0.66 0.768645
Target:  5'- gGAUCgGGGGCugcuGCCccGCGugcAGCGCGgGCg -3'
miRNA:   3'- -CUAGgUCCCG----CGGu-CGC---UCGUGUgCG- -5'
5227 5' -59.6 NC_001798.1 + 77425 0.66 0.768645
Target:  5'- aGUCCAGGcGCGCCGgGCcuGCGCccaGCc -3'
miRNA:   3'- cUAGGUCC-CGCGGU-CGcuCGUGug-CG- -5'
5227 5' -59.6 NC_001798.1 + 111872 0.66 0.768645
Target:  5'- --aCCAgGGGCuCCAGCGAGCuCGggaGCc -3'
miRNA:   3'- cuaGGU-CCCGcGGUCGCUCGuGUg--CG- -5'
5227 5' -59.6 NC_001798.1 + 3009 0.66 0.759345
Target:  5'- gGcgCgGGGGCG-CGGCGGGC-CGgGCu -3'
miRNA:   3'- -CuaGgUCCCGCgGUCGCUCGuGUgCG- -5'
5227 5' -59.6 NC_001798.1 + 136775 0.66 0.759345
Target:  5'- gGAUCCAGuGGCaGCUgcggaggagaaGGC-AGCGgACGCg -3'
miRNA:   3'- -CUAGGUC-CCG-CGG-----------UCGcUCGUgUGCG- -5'
5227 5' -59.6 NC_001798.1 + 153931 0.66 0.759345
Target:  5'- cGUCCgccuGGGGCaCCAGCagccAGCGC-CGCa -3'
miRNA:   3'- cUAGG----UCCCGcGGUCGc---UCGUGuGCG- -5'
5227 5' -59.6 NC_001798.1 + 28987 0.66 0.759345
Target:  5'- --cCCAGggggcGGCGCCGGCcaacCGCGCGCc -3'
miRNA:   3'- cuaGGUC-----CCGCGGUCGcuc-GUGUGCG- -5'
5227 5' -59.6 NC_001798.1 + 88070 0.66 0.759345
Target:  5'- cGUCCccuGGGGCGgCGGCGucuAGCuCGCGg -3'
miRNA:   3'- cUAGG---UCCCGCgGUCGC---UCGuGUGCg -5'
5227 5' -59.6 NC_001798.1 + 31327 0.66 0.749937
Target:  5'- -uUCCcccuGCgGCCGGCGgggGGCGCGCGCa -3'
miRNA:   3'- cuAGGucc-CG-CGGUCGC---UCGUGUGCG- -5'
5227 5' -59.6 NC_001798.1 + 83028 0.66 0.749937
Target:  5'- ---gCAGGGCGCuguuuCAGCGcAGCA-ACGCc -3'
miRNA:   3'- cuagGUCCCGCG-----GUCGC-UCGUgUGCG- -5'
5227 5' -59.6 NC_001798.1 + 20336 0.66 0.749937
Target:  5'- --aCCAGGugGCGCaGGCG-GUugGCGCu -3'
miRNA:   3'- cuaGGUCC--CGCGgUCGCuCGugUGCG- -5'
5227 5' -59.6 NC_001798.1 + 44486 0.66 0.749937
Target:  5'- uGggCCGGGuGCGCCcuuucggguGGUGGGU-CACGCc -3'
miRNA:   3'- -CuaGGUCC-CGCGG---------UCGCUCGuGUGCG- -5'
5227 5' -59.6 NC_001798.1 + 53247 0.66 0.749937
Target:  5'- --gCCGuGGGCGuCCuGCG-GCAgCGCGCc -3'
miRNA:   3'- cuaGGU-CCCGC-GGuCGCuCGU-GUGCG- -5'
5227 5' -59.6 NC_001798.1 + 56081 0.66 0.749937
Target:  5'- -uUCCGGaGGCGUuuG-GAGCcCACGCg -3'
miRNA:   3'- cuAGGUC-CCGCGguCgCUCGuGUGCG- -5'
5227 5' -59.6 NC_001798.1 + 2669 0.66 0.749937
Target:  5'- -cUCCcGcGGCGCggaGGCGGGCGCG-GCg -3'
miRNA:   3'- cuAGGuC-CCGCGg--UCGCUCGUGUgCG- -5'
5227 5' -59.6 NC_001798.1 + 80413 0.66 0.749937
Target:  5'- cGUCCucGGGCGCaugugucuGcCGAGCGC-CGCu -3'
miRNA:   3'- cUAGGu-CCCGCGgu------C-GCUCGUGuGCG- -5'
5227 5' -59.6 NC_001798.1 + 52772 0.66 0.74043
Target:  5'- cGUCCucGGCGCCc-CGGGCGCcCGUg -3'
miRNA:   3'- cUAGGucCCGCGGucGCUCGUGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.