miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 117995 0.66 0.608428
Target:  5'- -cCCGCCGGGGUgCcGCGA--GCUCg -3'
miRNA:   3'- gaGGCGGCCCCGgGuCGUUgcCGAGg -5'
5228 3' -63.6 NC_001798.1 + 70203 0.66 0.608428
Target:  5'- cCUCCGCCGGccGCCCucccccucgAGCGAgcCGGCg-- -3'
miRNA:   3'- -GAGGCGGCCc-CGGG---------UCGUU--GCCGagg -5'
5228 3' -63.6 NC_001798.1 + 22873 0.66 0.608428
Target:  5'- -cCCGCCGcGcGGCCCggguucggguGGC-ACGGUgggCCg -3'
miRNA:   3'- gaGGCGGC-C-CCGGG----------UCGuUGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 131355 0.66 0.608428
Target:  5'- --aCGUCGGcGCCCGGC-GCGGcCUCg -3'
miRNA:   3'- gagGCGGCCcCGGGUCGuUGCC-GAGg -5'
5228 3' -63.6 NC_001798.1 + 3523 0.66 0.608428
Target:  5'- gUgCGCCaGGcCCCAGCcgaAGCGGC-CCg -3'
miRNA:   3'- gAgGCGGcCCcGGGUCG---UUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 60897 0.66 0.60746
Target:  5'- -aCCGCCGGGaagaugaGCCaugccGCGAC-GCUCCc -3'
miRNA:   3'- gaGGCGGCCC-------CGGgu---CGUUGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 93105 0.66 0.60746
Target:  5'- --aCGCCGGgaacaagGGCCCGGCgGGCGGgUUUg -3'
miRNA:   3'- gagGCGGCC-------CCGGGUCG-UUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 5976 0.66 0.598761
Target:  5'- -gCCGCaccaGGGGacaCCGGCugcGCGGCggagaCCg -3'
miRNA:   3'- gaGGCGg---CCCCg--GGUCGu--UGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 16632 0.66 0.598761
Target:  5'- --gCGCCGGGGCaggucuugccgcCCGGCGuccGCGGaaCCc -3'
miRNA:   3'- gagGCGGCCCCG------------GGUCGU---UGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 60295 0.66 0.598761
Target:  5'- -gCCGuuGGGGCCgAGCucgaacgugGugGGUUUg -3'
miRNA:   3'- gaGGCggCCCCGGgUCG---------UugCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 124975 0.66 0.598761
Target:  5'- gCUCCGCgUGGucCCCgAGCAgcACGGCggCCa -3'
miRNA:   3'- -GAGGCG-GCCccGGG-UCGU--UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 135236 0.66 0.598761
Target:  5'- -gCUGCCGGaaGCCCGGgGGCgGGCgggCCu -3'
miRNA:   3'- gaGGCGGCCc-CGGGUCgUUG-CCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 12305 0.66 0.598761
Target:  5'- -aUCGCCa-GGCCCuGCAGCGaGCggCCg -3'
miRNA:   3'- gaGGCGGccCCGGGuCGUUGC-CGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 25885 0.66 0.598761
Target:  5'- -cCCGCCGacGGGCCCguGGUcucGCGGCagCa -3'
miRNA:   3'- gaGGCGGC--CCCGGG--UCGu--UGCCGagG- -5'
5228 3' -63.6 NC_001798.1 + 29539 0.66 0.598761
Target:  5'- -cCCGCCGGGGC---GCG-CGGCUa- -3'
miRNA:   3'- gaGGCGGCCCCGgguCGUuGCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 59632 0.66 0.59297
Target:  5'- cCUCCGCCGccucGGGUCCGuaucucGCGGagagggggggcgacuCGGCUCg -3'
miRNA:   3'- -GAGGCGGC----CCCGGGU------CGUU---------------GCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 53839 0.66 0.589115
Target:  5'- -gCCGCCuGGGCCCcGCcgaucgcCGGUUCg -3'
miRNA:   3'- gaGGCGGcCCCGGGuCGuu-----GCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 141124 0.66 0.589115
Target:  5'- -gCCGCCGGcGCaUCGGCAACcagGGCcgCCg -3'
miRNA:   3'- gaGGCGGCCcCG-GGUCGUUG---CCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 2459 0.66 0.589115
Target:  5'- -gCCGCCcugcgggucGGGGCCCucGGCGggccgGCGGgUCa -3'
miRNA:   3'- gaGGCGG---------CCCCGGG--UCGU-----UGCCgAGg -5'
5228 3' -63.6 NC_001798.1 + 42308 0.66 0.589115
Target:  5'- -gCCGUCGGGGCCgaucuUGGCGaaauACGGCa-- -3'
miRNA:   3'- gaGGCGGCCCCGG-----GUCGU----UGCCGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.