Results 1 - 20 of 221 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 42308 | 0.66 | 0.589115 |
Target: 5'- -gCCGUCGGGGCCgaucuUGGCGaaauACGGCa-- -3' miRNA: 3'- gaGGCGGCCCCGG-----GUCGU----UGCCGagg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 60295 | 0.66 | 0.598761 |
Target: 5'- -gCCGuuGGGGCCgAGCucgaacgugGugGGUUUg -3' miRNA: 3'- gaGGCggCCCCGGgUCG---------UugCCGAGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 16632 | 0.66 | 0.598761 |
Target: 5'- --gCGCCGGGGCaggucuugccgcCCGGCGuccGCGGaaCCc -3' miRNA: 3'- gagGCGGCCCCG------------GGUCGU---UGCCgaGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 5976 | 0.66 | 0.598761 |
Target: 5'- -gCCGCaccaGGGGacaCCGGCugcGCGGCggagaCCg -3' miRNA: 3'- gaGGCGg---CCCCg--GGUCGu--UGCCGa----GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 59632 | 0.66 | 0.59297 |
Target: 5'- cCUCCGCCGccucGGGUCCGuaucucGCGGagagggggggcgacuCGGCUCg -3' miRNA: 3'- -GAGGCGGC----CCCGGGU------CGUU---------------GCCGAGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 26087 | 0.66 | 0.589115 |
Target: 5'- cCUCUGCCGcGGGgCCAaCGuGCGGUaCCg -3' miRNA: 3'- -GAGGCGGC-CCCgGGUcGU-UGCCGaGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 2459 | 0.66 | 0.589115 |
Target: 5'- -gCCGCCcugcgggucGGGGCCCucGGCGggccgGCGGgUCa -3' miRNA: 3'- gaGGCGG---------CCCCGGG--UCGU-----UGCCgAGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 141124 | 0.66 | 0.589115 |
Target: 5'- -gCCGCCGGcGCaUCGGCAACcagGGCcgCCg -3' miRNA: 3'- gaGGCGGCCcCG-GGUCGUUG---CCGa-GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 53839 | 0.66 | 0.589115 |
Target: 5'- -gCCGCCuGGGCCCcGCcgaucgcCGGUUCg -3' miRNA: 3'- gaGGCGGcCCCGGGuCGuu-----GCCGAGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 124975 | 0.66 | 0.598761 |
Target: 5'- gCUCCGCgUGGucCCCgAGCAgcACGGCggCCa -3' miRNA: 3'- -GAGGCG-GCCccGGG-UCGU--UGCCGa-GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 135236 | 0.66 | 0.598761 |
Target: 5'- -gCUGCCGGaaGCCCGGgGGCgGGCgggCCu -3' miRNA: 3'- gaGGCGGCCc-CGGGUCgUUG-CCGa--GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 12305 | 0.66 | 0.598761 |
Target: 5'- -aUCGCCa-GGCCCuGCAGCGaGCggCCg -3' miRNA: 3'- gaGGCGGccCCGGGuCGUUGC-CGa-GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 70203 | 0.66 | 0.608428 |
Target: 5'- cCUCCGCCGGccGCCCucccccucgAGCGAgcCGGCg-- -3' miRNA: 3'- -GAGGCGGCCc-CGGG---------UCGUU--GCCGagg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 22873 | 0.66 | 0.608428 |
Target: 5'- -cCCGCCGcGcGGCCCggguucggguGGC-ACGGUgggCCg -3' miRNA: 3'- gaGGCGGC-C-CCGGG----------UCGuUGCCGa--GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 131355 | 0.66 | 0.608428 |
Target: 5'- --aCGUCGGcGCCCGGC-GCGGcCUCg -3' miRNA: 3'- gagGCGGCCcCGGGUCGuUGCC-GAGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 3523 | 0.66 | 0.608428 |
Target: 5'- gUgCGCCaGGcCCCAGCcgaAGCGGC-CCg -3' miRNA: 3'- gAgGCGGcCCcGGGUCG---UUGCCGaGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 93105 | 0.66 | 0.60746 |
Target: 5'- --aCGCCGGgaacaagGGCCCGGCgGGCGGgUUUg -3' miRNA: 3'- gagGCGGCC-------CCGGGUCG-UUGCCgAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 60897 | 0.66 | 0.60746 |
Target: 5'- -aCCGCCGGGaagaugaGCCaugccGCGAC-GCUCCc -3' miRNA: 3'- gaGGCGGCCC-------CGGgu---CGUUGcCGAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 29539 | 0.66 | 0.598761 |
Target: 5'- -cCCGCCGGGGC---GCG-CGGCUa- -3' miRNA: 3'- gaGGCGGCCCCGgguCGUuGCCGAgg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 25885 | 0.66 | 0.598761 |
Target: 5'- -cCCGCCGacGGGCCCguGGUcucGCGGCagCa -3' miRNA: 3'- gaGGCGGC--CCCGGG--UCGu--UGCCGagG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home