Results 41 - 60 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 4125 | 0.66 | 0.589115 |
Target: 5'- gCUCgGCCGGGGCgCC-GCcccCGGggCCc -3' miRNA: 3'- -GAGgCGGCCCCG-GGuCGuu-GCCgaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 42308 | 0.66 | 0.589115 |
Target: 5'- -gCCGUCGGGGCCgaucuUGGCGaaauACGGCa-- -3' miRNA: 3'- gaGGCGGCCCCGG-----GUCGU----UGCCGagg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 53839 | 0.66 | 0.589115 |
Target: 5'- -gCCGCCuGGGCCCcGCcgaucgcCGGUUCg -3' miRNA: 3'- gaGGCGGcCCCGGGuCGuu-----GCCGAGg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 141124 | 0.66 | 0.589115 |
Target: 5'- -gCCGCCGGcGCaUCGGCAACcagGGCcgCCg -3' miRNA: 3'- gaGGCGGCCcCG-GGUCGUUG---CCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 2459 | 0.66 | 0.589115 |
Target: 5'- -gCCGCCcugcgggucGGGGCCCucGGCGggccgGCGGgUCa -3' miRNA: 3'- gaGGCGG---------CCCCGGG--UCGU-----UGCCgAGg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 26087 | 0.66 | 0.589115 |
Target: 5'- cCUCUGCCGcGGGgCCAaCGuGCGGUaCCg -3' miRNA: 3'- -GAGGCGGC-CCCgGGUcGU-UGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 59632 | 0.66 | 0.59297 |
Target: 5'- cCUCCGCCGccucGGGUCCGuaucucGCGGagagggggggcgacuCGGCUCg -3' miRNA: 3'- -GAGGCGGC----CCCGGGU------CGUU---------------GCCGAGg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 5976 | 0.66 | 0.598761 |
Target: 5'- -gCCGCaccaGGGGacaCCGGCugcGCGGCggagaCCg -3' miRNA: 3'- gaGGCGg---CCCCg--GGUCGu--UGCCGa----GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 16632 | 0.66 | 0.598761 |
Target: 5'- --gCGCCGGGGCaggucuugccgcCCGGCGuccGCGGaaCCc -3' miRNA: 3'- gagGCGGCCCCG------------GGUCGU---UGCCgaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 9507 | 0.67 | 0.538598 |
Target: 5'- gUCCGCCacgcgaauguaaguGGGGCCCGucGCcgaGGC-CCg -3' miRNA: 3'- gAGGCGG--------------CCCCGGGU--CGuugCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 87717 | 0.67 | 0.532028 |
Target: 5'- cCUCCGCCGuaGCgCCGGCccccgcCGGC-CCg -3' miRNA: 3'- -GAGGCGGCccCG-GGUCGuu----GCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 20176 | 0.67 | 0.532028 |
Target: 5'- -cUCGCacacGGGCUCGGCGGCGGgUUCa -3' miRNA: 3'- gaGGCGgc--CCCGGGUCGUUGCCgAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 115836 | 0.67 | 0.532028 |
Target: 5'- --aCGcCCGGGGCCUggAGCu-CGGCguuggCCg -3' miRNA: 3'- gagGC-GGCCCCGGG--UCGuuGCCGa----GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 21716 | 0.67 | 0.540481 |
Target: 5'- uCUCCGCCGcgcagccGGuguGCCCcugguGCGGCGGCgaCCg -3' miRNA: 3'- -GAGGCGGC-------CC---CGGGu----CGUUGCCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 2429 | 0.67 | 0.541423 |
Target: 5'- -gUgGCUGGGcCCCGGCGGCuGGCggcgCCa -3' miRNA: 3'- gaGgCGGCCCcGGGUCGUUG-CCGa---GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 29033 | 0.67 | 0.541423 |
Target: 5'- aCUCCGCCccGGcgaccGCCCcGCGcCGGCUUCc -3' miRNA: 3'- -GAGGCGG--CCc----CGGGuCGUuGCCGAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 79980 | 0.67 | 0.541423 |
Target: 5'- gUCCGCCGccGGGCCCc-CGGgGGUcCCa -3' miRNA: 3'- gAGGCGGC--CCCGGGucGUUgCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 149443 | 0.67 | 0.541423 |
Target: 5'- --gUGCuCGGGGagCAggguGCGGCGGCUCCa -3' miRNA: 3'- gagGCG-GCCCCggGU----CGUUGCCGAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 150830 | 0.67 | 0.545196 |
Target: 5'- gCUCCG-CGGGGCgCCAGgGggcgccggucgggucGCGGCgggCUg -3' miRNA: 3'- -GAGGCgGCCCCG-GGUCgU---------------UGCCGa--GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 91573 | 0.67 | 0.532028 |
Target: 5'- gUCCGCgGGGGCgCC-GCGGuuucuuuuuauCGGC-CCg -3' miRNA: 3'- gAGGCGgCCCCG-GGuCGUU-----------GCCGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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